| Publication |
Sentence |
Publish Date |
Extraction Date |
Species |
| Ping Xuan, Bingxu Chen, Tiangang Zhang, Yan Yan. Prediction of Drug-Target Interactions Based on Network Representation Learning and Ensemble Learning. IEEE/ACM transactions on computational biology and bioinformatics. vol 18. issue 6. 2021-12-10. PMID:32340959. |
we propose a network representation learning method based on matrix factorisation to learn low-dimensional vector representations of drug and protein nodes. |
2021-12-10 |
2023-08-13 |
Not clear |
| Yesen Sun, Le Ou-Yang, Dao-Qing Da. WMLRR: A Weighted Multi-View Low Rank Representation to Identify Cancer Subtypes From Multiple Types of Omics Data. IEEE/ACM transactions on computational biology and bioinformatics. vol 18. issue 6. 2021-12-10. PMID:33656995. |
given a group of patients described by multiple omics data matrices, we first learn a unified affinity matrix which encodes the similarities among patients by exploring the sparsity-consistent low-rank representations from the joint decompositions of multiple omics data matrices. |
2021-12-10 |
2023-08-13 |
Not clear |
| Yijie Ding, Wenying He, Jijun Tang, Quan Zou, Fei Gu. Laplacian Regularized Sparse Representation based Classifier for Identifying DNA N4-methylcytosine Sites via L2,1/2-matrix Norm. IEEE/ACM transactions on computational biology and bioinformatics. vol PP. 2021-12-09. PMID:34882559. |
matrix factorization technology is employed to solve the sparse representation coefficients of all test samples in the training set. |
2021-12-09 |
2023-08-13 |
Not clear |
| Graeme T Lloyd, Graham J Slate. A Total-Group Phylogenetic Metatree for Cetacea and the Importance of Fossil Data in Diversification Analyses. Systematic biology. vol 70. issue 5. 2021-12-08. PMID:33507304. |
[extinction; macroevolution; matrix representation with parsimony; morphology; supertree. |
2021-12-08 |
2023-08-13 |
Not clear |
| Gang Yao, Ryan Saltus, Ashwin P Dan. Shape Estimation for Elongated Deformable Object using B-spline Chained Multiple Random Matrices Model. International journal of intelligent robotics and applications. vol 4. 2021-12-03. PMID:34423114. |
in this paper, a b-spline chained multiple random matrix models (rmms) representation is proposed to model geometric characteristics of an elongated deformable object. |
2021-12-03 |
2023-08-13 |
Not clear |
| Farman Ali, Shahid Akbar, Ali Ghulam, Zulfikar Ahmed Maher, Ahsanullah Unar, Dhani Bux Talpu. AFP-CMBPred: Computational identification of antifreeze proteins by extending consensus sequences into multi-blocks evolutionary information. Computers in biology and medicine. vol 139. 2021-12-03. PMID:34749096. |
the sequences of afps are formulated via four different feature representation methods, such as amphiphilic pseudo amino acid composition (amp-pseaac), dipeptide deviation from expected mean (dde), multi-blocks position specific scoring matrix (mb-pssm), and consensus sequence-based on multi-blocks position specific scoring matrix (cs-mb-pssm) to collect local and global descriptors. |
2021-12-03 |
2023-08-13 |
Not clear |
| Shuichi Kitada, Reiichiro Nakamichi, Hirohisa Kishin. Understanding population structure in an evolutionary context: population-specific FST and pairwise FST. G3 (Bethesda, Md.). vol 11. issue 11. 2021-12-01. PMID:34549777. |
to understand the current population structure and a population's history of range expansion, we propose a representation method that overlays population-specific fst estimates on a sampling location map, and on an unrooted neighbor-joining tree and a multi-dimensional scaling plot inferred from a pairwise fst distance matrix. |
2021-12-01 |
2023-08-13 |
human |
| Siwon Yu, Yun Hyeong Hwang, Kang Taek Lee, Sang Ouk Kim, Jun Yeon Hwang, Soon Hyung Hon. Outstanding Strengthening and Toughening Behavior of 3D-Printed Fiber-Reinforced Composites Designed by Biomimetic Interfacial Heterogeneity. Advanced science (Weinheim, Baden-Wurttemberg, Germany). 2021-11-25. PMID:34821483. |
the strong interfacial adhesion between the fibers and matrix, with accompanying the inherently weak interfacial adhesion between intermediate filaments and the resultant interfacial voids, provide a close representation of the toughness behavior of natural architectures relying on the localized heterogeneity. |
2021-11-25 |
2023-08-13 |
Not clear |
| Ozlem Karabiber Cura, Aydin Aka. Classification of Epileptic EEG Signals Using Synchrosqueezing Transform and Machine Learning. International journal of neural systems. vol 31. issue 5. 2021-11-24. PMID:33522458. |
various features like higher-order joint tf (hoj-tf) moments and gray-level co-occurrence matrix (glcm)-based features are calculated using the sst representation. |
2021-11-24 |
2023-08-13 |
Not clear |
| Charles Morphy D Santos, Daubian Santos, Joo Paulo Gois, Muhsen Hammou. BuM 2.0: Software for online generation of matrices for Brooks Parsimony Analysis. Zootaxa. vol 5005. issue 2. 2021-11-24. PMID:34811265. |
we present here bum 2.0, an online framework to automatically create matrices for brooks parsimony analysis (bpa) using baum ragans algorithm for matrix representation with parsimony. |
2021-11-24 |
2023-08-13 |
Not clear |
| Misha E Kilmer, Lior Horesh, Haim Avron, Elizabeth Newma. Tensor-tensor algebra for optimal representation and compression of multiway data. Proceedings of the National Academy of Sciences of the United States of America. vol 118. issue 28. 2021-11-23. PMID:34234014. |
since such optimality properties can be proven in both matrix and tensor-based algebras, a fundamental question arises: does the tensor construct subsume the matrix construct in terms of representation efficiency? |
2021-11-23 |
2023-08-13 |
Not clear |
| Misha E Kilmer, Lior Horesh, Haim Avron, Elizabeth Newma. Tensor-tensor algebra for optimal representation and compression of multiway data. Proceedings of the National Academy of Sciences of the United States of America. vol 118. issue 28. 2021-11-23. PMID:34234014. |
the answer is positive, as proven by showing that a tensor-tensor representation of an equal dimensional spanning space can be superior to its matrix counterpart. |
2021-11-23 |
2023-08-13 |
Not clear |
| Evelyne Decullier, Mathilde Chauliaguet, Arnaud Siméone, Julie Haesebaert, Agnès Witk. Representations of Research among Newly Graduated Paramedical Professionals: A Qualitative Study. International journal of environmental research and public health. vol 18. issue 21. 2021-11-19. PMID:34769846. |
the hierarchical evocation matrix revealed that the scientific representation of research is based on words defining the research and the purpose of the research. |
2021-11-19 |
2023-08-13 |
human |
| Syver Døving Agdestein, Try Nguyen Tran, Jing-Rebecca L. Practical computation of the diffusion MRI signal based on Laplace eigenfunctions: permeable interfaces. NMR in biomedicine. 2021-11-19. PMID:34796990. |
a closed form representation of this reference diffusion mri signal, called matrix formalism, which makes explicit the link between the laplace eigenvalues and eigenfunctions of the tissue geometry and its diffusion mri signal, was derived 20 years ago. |
2021-11-19 |
2023-08-13 |
human |
| Syver Døving Agdestein, Try Nguyen Tran, Jing-Rebecca L. Practical computation of the diffusion MRI signal based on Laplace eigenfunctions: permeable interfaces. NMR in biomedicine. 2021-11-19. PMID:34796990. |
in a previous publication, we presented a simulation framework that we implemented inside the matlab-based diffusion mri simulator spindoctor that efficiently computes the matrix formalism representation for biological cells subject to impermeable membrane boundary conditions. |
2021-11-19 |
2023-08-13 |
human |
| Megan A Mezera, Wenli Li, Milo C Wiltban. Pregnancy-induced changes in the transcriptome of the bovine corpus luteum during and after embryonic interferon-tau secretion†. Biology of reproduction. vol 105. issue 1. 2021-11-17. PMID:33690863. |
beyond luteolytic genes and isgs, over representation analyses highlighted the prevalence of altered genes within the extracellular matrix and regulation of insulin-like growth factor (igf) availability, confirming results of other studies independent of luteolytic genes. |
2021-11-17 |
2023-08-13 |
cattle |
| Saeedreza Shehnepoor, Roberto Togneri, Wei Liu, Mohammed Bennamou. HIN-RNN: A Graph Representation Learning Neural Network for Fraudster Group Detection With No Handcrafted Features. IEEE transactions on neural networks and learning systems. vol PP. 2021-11-17. PMID:34752411. |
given a co-review network representing reviewers who have reviewed the same items with similar ratings and the reviewers' vector representation, a collaboration matrix is captured through the hin-rnn training. |
2021-11-17 |
2023-08-13 |
Not clear |
| Hangjun Che, Jun Wang, Andrzej Cichock. Bicriteria Sparse Nonnegative Matrix Factorization via Two-Timescale Duplex Neurodynamic Optimization. IEEE transactions on neural networks and learning systems. vol PP. 2021-11-17. PMID:34788223. |
in this article, sparse nonnegative matrix factorization (snmf) is formulated as a mixed-integer bicriteria optimization problem for minimizing matrix factorization errors and maximizing factorized matrix sparsity based on an exact binary representation of l |
2021-11-17 |
2023-08-13 |
Not clear |
| Aleix Beneyto, Vicenç Puig, B Wayne Bequette, Josep Veh. A Hybrid Automata Approach for Monitoring the Patient in the Loop in Artificial Pancreas Systems. Sensors (Basel, Switzerland). vol 21. issue 21. 2021-11-16. PMID:34770425. |
to that aim, a linear parameter varying (lpv) polytopic representation of the system is adopted and a bank of kalman filters is designed using linear matrix inequalities (lmi). |
2021-11-16 |
2023-08-13 |
human |
| Shicheng Li, Shumin Lai, Yan Jiang, Wenle Wang, Yugen Y. Graph Regularized Deep Sparse Representation for Unsupervised Anomaly Detection. Computational intelligence and neuroscience. vol 2021. 2021-11-16. PMID:34777492. |
sparse representation (sr) can be regarded as one of matrix factorization (mf) methods, which is a powerful tool for fr. |
2021-11-16 |
2023-08-13 |
Not clear |