| Publication |
Sentence |
Publish Date |
Extraction Date |
Species |
| M Schmitz, G Stege. Base-pair probability profiles of RNA secondary structures. Computer applications in the biosciences : CABIOS. vol 8. issue 4. 1992-09-17. PMID:1498695. |
a clear representation of the equilibrium distribution of secondary structures is derived from a two-dimensional bonding matrix with base-pairing probability as the third dimension. |
1992-09-17 |
2023-08-11 |
Not clear |
| G W Sherous. Coordinate transformation as a primary representation of radiotherapy beam geometry. Medical physics. vol 19. issue 1. 1992-07-31. PMID:1620044. |
it is demonstrated that the specification of the geometric relationship of a treatment beam to a patient can be uniquely given by a 4 x 4 coordinate transformation matrix, and that the matrix representation can be translated from (and to) the more conventional machine-based specification of geometry. |
1992-07-31 |
2023-08-11 |
Not clear |
| S Lele, J T Richtsmeie. Euclidean distance matrix analysis: a coordinate-free approach for comparing biological shapes using landmark data. American journal of physical anthropology. vol 86. issue 3. 1992-01-16. PMID:1746646. |
lele (1991a) critically discusses these approaches and proposes a new method based on the euclidean distance matrix representation of the form of an object. |
1992-01-16 |
2023-08-11 |
Not clear |
| E A Ferrán, P Ferrar. Topological maps of protein sequences. Biological cybernetics. vol 65. issue 6. 1992-01-09. PMID:1958730. |
the network is trained with the kohonen unsupervised learning algorithm, using matrix pattern representations of the protein sequences as inputs. |
1992-01-09 |
2023-08-11 |
Not clear |
| E L Mehler, J L Pascual-Ahuir, H Weinstei. Structural dynamics of calmodulin and troponin C. Protein engineering. vol 4. issue 6. 1991-12-13. PMID:1946320. |
methods of macromolecular structure analysis, including linear distance plots, distance matrices and a matrix representation of hydrogen bonding, were used to analyze the nature, the extent and the source of structural differences between the computed structures of the molecules and their conformations in the crystal. |
1991-12-13 |
2023-08-11 |
Not clear |
| S Lel. Some comments on coordinate-free and scale-invariant methods in morphometrics. American journal of physical anthropology. vol 85. issue 4. 1991-11-21. PMID:1928314. |
additionally an alternative approach based on euclidean distance matrix representation is presented. |
1991-11-21 |
2023-08-11 |
Not clear |
| A D Factor, E L Mehle. Graphical representation of hydrogen bonding patterns in proteins. Protein engineering. vol 4. issue 4. 1991-10-02. PMID:1881868. |
subsequently graphical objects are generated for all elements which are labeled as representing one or more h-bonds, and which can then be plotted or displayed in a way analogous to the graphical representation of the distance matrix (dm). |
1991-10-02 |
2023-08-11 |
Not clear |
| M M Ventur. Phospholipases A2: a dendrogram from a distance matrix based on size and hydrophobicity of the residues in their homologous sequences. Anais da Academia Brasileira de Ciencias. vol 62. issue 2. 1991-06-27. PMID:2094177. |
a distance matrix was obtained from aligned homologous sequences of 32 phospholipases a2 (ec 3.1.1.4) (24 from elapid and 5 from viperid venoms, and 3 from mammals), on the basis of the quantities dij which are defined from a two-dimensional vector representation of the amino acid residues (dimensions: size and hydrophobicity). |
1991-06-27 |
2023-08-11 |
cattle |
| M A Nicolelis, C H Yu, L A Baccal. Structural characterization of the neural circuit responsible for control of cardiovascular functions in higher vertebrates. Computers in biology and medicine. vol 20. issue 6. 1991-03-22. PMID:2286073. |
a comparison of structural properties of a biological neural system responsible for cardiovascular function control in higher vertebrates with randomly connected networks was pursued using matrix representations of those circuits. |
1991-03-22 |
2023-08-11 |
Not clear |
| C Cislaghi, E Negri, C La Vecchia, F Lev. Trend surface models in the representation and analysis of time factors in cancer mortality. Revue d'epidemiologie et de sante publique. vol 38. issue 3. 1990-10-11. PMID:2396037. |
a method of graphic representation of time factors in cancer mortality is presented, based on different tonalities of grey applied to the surface of the matrix defined by various age-specific rates. |
1990-10-11 |
2023-08-11 |
Not clear |
| G Z Hertz, G W Hartzell, G D Storm. Identification of consensus patterns in unaligned DNA sequences known to be functionally related. Computer applications in the biosciences : CABIOS. vol 6. issue 2. 1990-08-06. PMID:2193692. |
the method is based on a matrix representation of binding site patterns. |
1990-08-06 |
2023-08-11 |
Not clear |
| D M Freeman, C H Sotak, H H Muller, S W Young, R E Hur. A double quantum coherence transfer proton NMR spectroscopy technique for monitoring steady-state tumor lactic acid levels in vivo. Magnetic resonance in medicine. vol 14. issue 2. 1990-06-29. PMID:2345512. |
in two-dimensional data matrix representations of the 2ddqct experiments (double quantum frequency on the vertical axis and chemical shift on the horizontal axis) the lactate signal (330 hz with the transmitter set at the water resonance) was well-resolved from lipid (480 hz, 600 hz). |
1990-06-29 |
2023-08-11 |
mouse |
| J M Martin, A Mouaddib, P Robau. Computer-assisted elaboration of job histories. Methods of information in medicine. vol 29. issue 2. 1990-06-25. PMID:2342430. |
finally, the authors show how the representation of company organization by means of a job exposure matrix (jem) can help to efficiently elaborate job histories. |
1990-06-25 |
2023-08-11 |
Not clear |
| G D Storm. Consensus patterns in DNA. Methods in enzymology. vol 183. 1990-04-26. PMID:2179676. |
matrix representations also provide an efficient method of aligning multiple sequences to identify binding site patterns that they have in common. |
1990-04-26 |
2023-08-11 |
Not clear |
| B Vidić, N Ujević, M M Shabahang, F van de Zand. Differentiation of interstitial cells and stromal proteins in the secondary septum of early postnatal rat: effect of maternal chronic exposure to whole cigarette smoke. The Anatomical record. vol 223. issue 2. 1989-06-08. PMID:2712343. |
furthermore, a greater cellular volume density (p less than 0.0002) and, inversely, a lesser quantitative representation of extracellular matrix (p less than 0.0002) was ascertained for the experimental septal interstitium. |
1989-06-08 |
2023-08-11 |
rat |
| G D Stormo, G W Hartzel. Identifying protein-binding sites from unaligned DNA fragments. Proceedings of the National Academy of Sciences of the United States of America. vol 86. issue 4. 1989-03-27. PMID:2919167. |
the method compares the "information content" of a large number of possible binding site alignments to arrive at a matrix representation of the binding site pattern. |
1989-03-27 |
2023-08-11 |
Not clear |
| J Rzeszowska-Wolny, S Razin, E Puvion, J Moreau, K Scherre. Isolation and characterization of stable nuclear matrix preparations and associated DNA from avian erythroblasts. Biology of the cell. vol 64. issue 1. 1989-03-27. PMID:3224216. |
in the presence or absence of copper ions, matrix dna was found to be qualitatively different compared with total dna, in particular with respect to the representation of specific repetitive sequences of the chicken beta globin gene domain. |
1989-03-27 |
2023-08-11 |
chicken |
| B H Jansen, W K Chen. Structural EEG analysis: an explorative study. International journal of bio-medical computing. vol 23. issue 3-4. 1989-03-24. PMID:3225061. |
by viewing the patterns as states in a markov chain, a representation of the eeg structure based on a state transition probability matrix emerges. |
1989-03-24 |
2023-08-11 |
human |
| R Unger, D Harel, J L Sussma. DNAMAT: an efficient graphic matrix sequence homology algorithm and its application to structural analysis. Computer applications in the biosciences : CABIOS. vol 2. issue 4. 1988-07-11. PMID:3450373. |
we present a fast algorithm to produce a graphic matrix representation of sequence homology. |
1988-07-11 |
2023-08-11 |
Not clear |
| D Tweed, T Vili. Implications of rotational kinematics for the oculomotor system in three dimensions. Journal of neurophysiology. vol 58. issue 4. 1988-01-04. PMID:3681398. |
this is not the only algebraic system for describing rotations, but it is the one that best fits the needs of the oculomotor system, and it yields much simpler models than do rotation matrix or other representations. |
1988-01-04 |
2023-08-11 |
Not clear |