| Publication |
Sentence |
Publish Date |
Extraction Date |
Species |
| J A Conde-Aguilera, C Cobo-Ortega, S Tesseraud, M Lessire, Y Mercier, J van Milge. Changes in body composition in broilers by a sulfur amino acid deficiency during growth. Poultry science. vol 92. issue 5. 2013-06-28. PMID:23571336. |
in contrast, it resulted in a decrease in the concentrations of lys and glu in the empty body, of phe, tyr, gly, and glu in the pectoralis muscle, and of ala in the offal (p < 0.05). |
2013-06-28 |
2023-08-12 |
Not clear |
| Stefano Bonissone, Nitin Gupta, Margaret Romine, Ralph A Bradshaw, Pavel A Pevzne. N-terminal protein processing: a comparative proteogenomic analysis. Molecular & cellular proteomics : MCP. vol 12. issue 1. 2013-06-24. PMID:23001859. |
although nme, through the universal enzymatic specificity of the methionine aminopeptidases, results in the removal of the initiator met in proteins when the second residue is gly, ala, ser, cys, thr, pro, or val, the comparative genomic analyses suggest that this specificity may vary modestly in some organisms. |
2013-06-24 |
2023-08-12 |
Not clear |
| Pedro P Madeira, Ana Bessa, Luís Álvares-Ribeiro, M Raquel Aires-Barros, Alírio E Rodrigues, Boris Y Zaslavsk. Analysis of amino acid-water interactions by partitioning in aqueous two-phase systems. I--amino acids with non-polar side-chains. Journal of chromatography. A. vol 1274. 2013-06-20. PMID:23273636. |
partition ratios of 10 l-amino acids with non-polar side chains (gly, ala, val, nor-val, ile, leu, nor-leu, phe, trp and pro) were measured in ten different polymer/polymer aqueous two-phase systems (atps) containing 0.15 m nacl in 0.01 m phosphate buffer, ph 7.4. |
2013-06-20 |
2023-08-12 |
Not clear |
| Samantha S Bokatzian-Johnson, Michele L Stover, David A Dixon, Carolyn J Cassad. Gas-phase deprotonation of the peptide backbone for tripeptides and their methyl esters with hydrogen and methyl side chains. The journal of physical chemistry. B. vol 116. issue 51. 2013-06-03. PMID:23194315. |
the tripeptides are about 10 kcal/mol more acidic than the amino acids glycine (gly) and alanine (ala). |
2013-06-03 |
2023-08-12 |
Not clear |
| Huansheng Yang, Dezhi Fu, Hua Shao, Xiangfeng Kong, Wence Wang, Xiaojian Yang, Charles M Nyachoti, Yulong Yi. Impacts of birth weight on plasma, liver and skeletal muscle neutral amino acid profiles and intestinal amino acid transporters in suckling Huanjiang mini-piglets. PloS one. vol 7. issue 12. 2013-05-24. PMID:23236407. |
results showed that the suckling piglets with lbw had higher contents of thr, ser, gly, ala, val, met, ile, leu, tyr, phe and pro in liver, and gly in skeletal muscle, whereas lower contents of met, ser and ala in plasma when compared with the hbw littermates. |
2013-05-24 |
2023-08-12 |
Not clear |
| Kosuke Oda, Yasuyuki Matoba, Takanori Kumagai, Masafumi Noda, Masanori Sugiyam. Crystallographic study to determine the substrate specificity of an L-serine-acetylating enzyme found in the D-cycloserine biosynthetic pathway. Journal of bacteriology. vol 195. issue 8. 2013-05-23. PMID:23396912. |
to clarify the substrate specificity, in the present study we determined the crystal structure of dcse at a 1.81-Å resolution, showing that the overall structure of dcse is similar to that of hat, whereas a turn region to form an oxyanion hole is obviously different between dcse and hat: in detail, the first and last residues in the turn of dcse are gly(52) and pro(55), respectively, but those of hat are ala and gly, respectively. |
2013-05-23 |
2023-08-12 |
Not clear |
| Kosuke Oda, Yasuyuki Matoba, Takanori Kumagai, Masafumi Noda, Masanori Sugiyam. Crystallographic study to determine the substrate specificity of an L-serine-acetylating enzyme found in the D-cycloserine biosynthetic pathway. Journal of bacteriology. vol 195. issue 8. 2013-05-23. PMID:23396912. |
we created a hat-like mutant of dcse in which gly(52) and pro(55) were replaced by ala and gly, respectively, showing that the mutant acetylates l-homoserine but scarcely acetylates l-serine. |
2013-05-23 |
2023-08-12 |
Not clear |
| Joana Rosmaninho-Salgado, Vera Cortez, Marta Estrada, Magda M Santana, Alexandra Gonçalves, Ana Patrícia Marques, Cláudia Cavada. Intracellular mechanisms coupled to NPY Y2 and Y5 receptor activation and lipid accumulation in murine adipocytes. Neuropeptides. vol 46. issue 6. 2013-05-06. PMID:22981159. |
furthermore, npy y(2) (npy(3-36), 100nm) or npy y(5) (npy(19-23)(gly(1), ser(3), gln(4), thr(6), ala(31), aib(32), gln(34)) pp, 100nm) receptor agonists increased lipid accumulation and ppar-γ expression. |
2013-05-06 |
2023-08-12 |
Not clear |
| Walter D Obregón, Daniela Lufrano, Constanza S Liggieri, Sebastián A Trejo, Sandra E Vairo-Cavalli, Francesc X Avilés, Nora S Priol. Biochemical characterization, cDNA cloning, and molecular modeling of araujiain aII, a papain-like cysteine protease from Araujia angustifolia latex. Planta. vol 234. issue 2. 2013-05-03. PMID:21424535. |
it exhibits esterolytic activity on several n-α-cbz-amino acid p-nitrophenyl esters with a preference for gln, ala, and gly derivatives. |
2013-05-03 |
2023-08-12 |
cat |
| Takateru Ishimori, Katsutoshi Takahashi, Masato Goto, Suguru Nakagawa, Yoshiaki Kasai, Yukifumi Konagaya, Hiroshi Batori, Atsushi Kobayashi, Hiroshi Urakam. Synergistic effects of high hydrostatic pressure, mild heating, and amino acids on germination and inactivation of Clostridium sporogenes spores. Applied and environmental microbiology. vol 78. issue 23. 2013-04-15. PMID:22983975. |
the spores were effectively inactivated by between 1.8 and 4.8 logs by pasteurization at 80°c after pressurization at 200 mpa at 45°c for 120 min with one of the amino acids with moderate hydrophobicity, such as leu, phe, cys met, ala, gly, or ser. |
2013-04-15 |
2023-08-12 |
Not clear |
| Takateru Ishimori, Katsutoshi Takahashi, Masato Goto, Suguru Nakagawa, Yoshiaki Kasai, Yukifumi Konagaya, Hiroshi Batori, Atsushi Kobayashi, Hiroshi Urakam. Synergistic effects of high hydrostatic pressure, mild heating, and amino acids on germination and inactivation of Clostridium sporogenes spores. Applied and environmental microbiology. vol 78. issue 23. 2013-04-15. PMID:22983975. |
spores in solutions containing 80 mm of either leu, phe, cys, met, ala, gly, or ser were successfully inactivated by pasteurization by more than 5.4 logs after pressurization at 200 mpa at 70°c for 15 to 120 min. |
2013-04-15 |
2023-08-12 |
Not clear |
| Swagata Chakraborty, A L Susmitha, Ramakrishna V Hosu. Selective lighting up of segments around Gly, Ala and Ser/Thr in proteins. Magnetic resonance in chemistry : MRC. vol 50. issue 9. 2013-04-04. PMID:22806716. |
selective lighting up of segments around gly, ala and ser/thr in proteins. |
2013-04-04 |
2023-08-12 |
Not clear |
| Swagata Chakraborty, A L Susmitha, Ramakrishna V Hosu. Selective lighting up of segments around Gly, Ala and Ser/Thr in proteins. Magnetic resonance in chemistry : MRC. vol 50. issue 9. 2013-04-04. PMID:22806716. |
in this context, we have designed a suite of 2d (13) c(α) -detected hnca experiments that provide sequential correlations of (13) c(α) with (15) n on one hand and efficient spectroscopic labeling of certain groups of residues, namely, gly, ala, ser and thr, on the other. |
2013-04-04 |
2023-08-12 |
Not clear |
| Swagata Chakraborty, A L Susmitha, Ramakrishna V Hosu. Selective lighting up of segments around Gly, Ala and Ser/Thr in proteins. Magnetic resonance in chemistry : MRC. vol 50. issue 9. 2013-04-04. PMID:22806716. |
the direct identification of peptide segments around gly, ala, ser and thr residues along a protein chain will be highly valuable for deriving important information on sites of ligand binding, phosphorylation, inhibitor/substrate binding, understanding protein folding pathways, comprehending local conformational dynamics etc. |
2013-04-04 |
2023-08-12 |
Not clear |
| Eunjung Lee, Jin-Kyoung Kim, Soyoung Shin, Ki-Woong Jeong, Areum Shin, Juneyoung Lee, Dong Gun Lee, Jae-Sam Hwang, Yangmee Ki. Insight into the antimicrobial activities of coprisin isolated from the dung beetle, Copris tripartitus, revealed by structure-activity relationships. Biochimica et biophysica acta. vol 1828. issue 2. 2013-04-04. PMID:23137439. |
to understand structure-activity relationships, we determined the three-dimensional structure of coprisin in aqueous solution by nuclear magnetic resonance spectroscopy, which showed that coprisin has an amphipathic α-helical structure from ala(19) to arg(28), and β-sheets from gly(31) to gln(35) and val(38) to arg(42). |
2013-04-04 |
2023-08-12 |
human |
| Naoki Fuchita, Saori Arita, Junya Ikuta, Masahiro Miura, Kaori Shimomura, Hiroyuki Motoshima, Keiichi Watanab. Gly or Ala substitutions for Pro(210)Thr(211)Asn(212) at the β8-β9 turn of subtilisin Carlsberg increase the catalytic rate and decrease thermostability. Biochimica et biophysica acta. vol 1824. issue 4. 2013-04-02. PMID:22326746. |
gly or ala substitutions for pro(210)thr(211)asn(212) at the β8-β9 turn of subtilisin carlsberg increase the catalytic rate and decrease thermostability. |
2013-04-02 |
2023-08-12 |
cat |
| Naoki Fuchita, Saori Arita, Junya Ikuta, Masahiro Miura, Kaori Shimomura, Hiroyuki Motoshima, Keiichi Watanab. Gly or Ala substitutions for Pro(210)Thr(211)Asn(212) at the β8-β9 turn of subtilisin Carlsberg increase the catalytic rate and decrease thermostability. Biochimica et biophysica acta. vol 1824. issue 4. 2013-04-02. PMID:22326746. |
to investigate the relationship between structure of this turn and enzyme activity as well as thermostability of mesophilic subtilisin carlsberg (sc), we analyzed 6 mutants of sc with a single, double, or triple gly or ala substitutions for pro(210)thr(211)asn(212) at the β8-β9 turn. |
2013-04-02 |
2023-08-12 |
cat |
| b' Matija Gredi\\xc4\\x8dak, Nikola Bregovi\\xc4\\x87, Dejana Cari\\xc4\\x87, Ivanka Jeri\\xc4\\x8. Amino acid-based tweezers: the role of turn-like conformation in the binding of copper(II). Journal of inorganic biochemistry. vol 116. 2013-03-28. PMID:23010328.' |
amino acids phe, leu, val, ala and gly were bridged through their c-terminuses with conformationally constrained motif, cis enediyne moiety ((z)-octa-4-en-2,6-diyne-1,8-diamine). |
2013-03-28 |
2023-08-12 |
Not clear |
| Tamara Dworeck, Martin Zimmerman. Site directed mutagenesis of Schizosaccharomyces pombe glutathione synthetase produces an enzyme with homoglutathione synthetase activity. PloS one. vol 7. issue 10. 2013-03-28. PMID:23091597. |
one mutation (substitution of ile471, cy472 to met and val and ala 485 and thr486 to leu and pro) increased the affinity of gsh2 for β-ala (k(m) 0,07) and lowered the affinity for gly (k(m) 0,83), which is a characteristic of the enzyme homoglutathione synthetase found in plants. |
2013-03-28 |
2023-08-12 |
Not clear |
| Ganesh Shanmugam, Prasad L Polavarap. Site-specific structure of Aβ(25-35) peptide: isotope-assisted vibrational circular dichroism study. Biochimica et biophysica acta. vol 1834. issue 1. 2013-03-18. PMID:22910376. |
isotope-assisted infrared vibrational circular dichroism (vcd) and absorption (va) spectroscopy were used for the parent aβ(25-35) peptide, along with doubly (13)c labeled peptides at the carbonyl groups of residues 29 (gly) and 30 (ala) [aβ(25-35:(13)c-29/30)] and at the carbonyl groups of residues 33 (gly) and 34 (leu) [aβ(25-35:(13)c-33/34)]. |
2013-03-18 |
2023-08-12 |
Not clear |