| Publication |
Sentence |
Publish Date |
Extraction Date |
Species |
| Ganesh Shanmugam, Prasad L Polavarap. Site-specific structure of Aβ(25-35) peptide: isotope-assisted vibrational circular dichroism study. Biochimica et biophysica acta. vol 1834. issue 1. 2013-03-18. PMID:22910376. |
the isotopic shifts suggest that the microenvironment of residues 29 (gly) and 30 (ala) could be different from that of residues 33 (gly) and 34 (leu). |
2013-03-18 |
2023-08-12 |
Not clear |
| Mahdieh Nazari-Robati, Khosro Khajeh, Mahdi Aminian, Nasrin Mollania, Abolfazl Golestan. Enhancement of thermal stability of chondroitinase ABC I by site-directed mutagenesis: an insight from Ramachandran plot. Biochimica et biophysica acta. vol 1834. issue 2. 2013-03-18. PMID:23159774. |
in this regard, gln140 with non-optimal φ and ψ values were replaced with gly, ala and asn. |
2013-03-18 |
2023-08-12 |
Not clear |
| Michael B Burt, Sarah G A Decker, Travis D Fridge. Water binding energies of [Pb(amino acid-H)H2O]+ complexes determined by blackbody infrared radiative dissociation. Physical chemistry chemical physics : PCCP. vol 14. issue 43. 2013-03-12. PMID:23041843. |
the water binding energies (e(0)) of eight deprotonated pb(2+)-amino acid (aa) complexes of the form [pb(aa-h)h(2)o](+) (aa = gly, ala, val, leu, ile, phe, glu, and lys) were determined using blackbody infrared radiative dissociation (bird). |
2013-03-12 |
2023-08-12 |
Not clear |
| Alejandro D Meruelo, Seong Kyu Han, Sanguk Kim, James U Bowi. Structural differences between thermophilic and mesophilic membrane proteins. Protein science : a publication of the Protein Society. vol 21. issue 11. 2013-03-04. PMID:23001966. |
in agreement with prior work examining transmembrane sequences, we find that thermophiles have an increase in small residues (gly, ala, ser, and val) and a strong suppression of cys. |
2013-03-04 |
2023-08-12 |
Not clear |
| Sagaya Theresa Leena Philominathan, Takaki Koide, Osamu Matsushita, Joshua Sako. Bacterial collagen-binding domain targets undertwisted regions of collagen. Protein science : a publication of the Protein Society. vol 21. issue 10. 2013-02-21. PMID:22898990. |
collageneous peptides with an additional undertwisted region were synthesized by introducing a gly → ala substitution [(pog)(x) poa(pog)(y)]₃, where x + y = 9 and x > 3). |
2013-02-21 |
2023-08-12 |
Not clear |
| Sagaya Theresa Leena Philominathan, Takaki Koide, Osamu Matsushita, Joshua Sako. Bacterial collagen-binding domain targets undertwisted regions of collagen. Protein science : a publication of the Protein Society. vol 21. issue 10. 2013-02-21. PMID:22898990. |
cbd binds to either the gly → ala substitution site or to the c-terminus of each minicollagen. |
2013-02-21 |
2023-08-12 |
Not clear |
| Sagaya Theresa Leena Philominathan, Takaki Koide, Osamu Matsushita, Joshua Sako. Bacterial collagen-binding domain targets undertwisted regions of collagen. Protein science : a publication of the Protein Society. vol 21. issue 10. 2013-02-21. PMID:22898990. |
small-angle x-ray scattering measurements revealed that cbd prefers to bind the gly → ala site to the c-terminus. |
2013-02-21 |
2023-08-12 |
Not clear |
| Anastasia S Domazou, Viviane Zelenay, Willem H Koppenol, Janusz M Gebick. Efficient depletion of ascorbate by amino acid and protein radicals under oxidative stress. Free radical biology & medicine. vol 53. issue 8. 2013-02-21. PMID:22910232. |
to estimate the relative probabilities of the reactions of ascorbate with protein c- and o-centered radicals, we measured by pulse radiolysis the rate constants of the reactions of c-centered radicals in gly, ala, and pro with o₂ and of the resultant peroxyl radicals with ascorbate. |
2013-02-21 |
2023-08-12 |
human |
| Anastasia S Domazou, Viviane Zelenay, Willem H Koppenol, Janusz M Gebick. Efficient depletion of ascorbate by amino acid and protein radicals under oxidative stress. Free radical biology & medicine. vol 53. issue 8. 2013-02-21. PMID:22910232. |
the high frequency of occurrence of gly, ala, and pro in proteins and the similar reaction rate constants of their c-centered radicals with o₂ and their peroxo-radicals with ascorbate suggest that our results are also valid for proteins. |
2013-02-21 |
2023-08-12 |
human |
| Daniela A Geisler, Carola Päpke, Toshihiro Obata, Adriano Nunes-Nesi, Annemarie Matthes, Kay Schneitz, Eugenia Maximova, Wagner L Araújo, Alisdair R Fernie, Staffan Persso. Downregulation of the δ-subunit reduces mitochondrial ATP synthase levels, alters respiration, and restricts growth and gametophyte development in Arabidopsis. The Plant cell. vol 24. issue 7. 2013-02-14. PMID:22805435. |
rna interference of delta resulted in growth retardation, reduced atp synthase amounts, and increased alternative oxidase capacity and led to specific long-term increases in ala and gly levels. |
2013-02-14 |
2023-08-12 |
Not clear |
| Barbara U Metzler-Zebeli, Iris S Lang, Solvig Görs, Klaus-Peter Brüssow, Ulf Hennig, Gerd Nürnberg, Charlotte Rehfeldt, Winfried Otten, Cornelia C Metge. High-protein-low-carbohydrate diet during pregnancy alters maternal plasma amino acid concentration and placental amino acid extraction but not fetal plasma amino acids in pigs. The British journal of nutrition. vol 108. issue 12. 2013-02-11. PMID:22456348. |
plasma concentrations of ile and val were increased and those of ala, glu and gly were decreased (p ≤ 0·05) in hp-lc compared with st sows at 64 and 94 dp. |
2013-02-11 |
2023-08-12 |
Not clear |
| Fernando Diez-García, Avijit Chakrabartty, Carlos González, Douglas V Laurent. An Arg-rich putative prebiotic protein is as stable as its Lys-rich variant. Archives of biochemistry and biophysics. vol 528. issue 2. 2013-02-11. PMID:23022061. |
since gly, ala and ile, and in lesser amounts arg and tyr have been reported to form under putative prebiotic earth conditions, it is plausible that ria7-like peptides might have formed on the primitive earth and interacted with rnas. |
2013-02-11 |
2023-08-12 |
Not clear |
| Angelo Zinellu, Salvatore Sotgia, Luca Deiana, Ciriaco Carr. Analysis of neurotransmitter amino acids by CE-LIF detection in biological fluids. Methods in molecular biology (Clifton, N.J.). vol 919. 2013-01-23. PMID:22976088. |
neurotransmitter amino acids like alanine (ala), glutamic acid (glu), aspartic acid (asp), serine (ser), taurine (tau), and glycine (gly) are widely distributed in biological fluids and tissues and they have important physiological functions, so that the evaluation of their levels in organisms plays an essential role in physiology. |
2013-01-23 |
2023-08-12 |
human |
| Yu Chen, M T Rodger. Re-evaluation of the proton affinity of 18-crown-6 using competitive threshold collision-induced dissociation techniques. Analytical chemistry. vol 84. issue 17. 2013-01-11. PMID:22881454. |
the bases examined include glycine (gly), alanine (ala), imidazole (imid), and 4-methylimidazole (4meimid). |
2013-01-11 |
2023-08-12 |
Not clear |
| Yu Chen, M T Rodger. Re-evaluation of the proton affinity of 18-crown-6 using competitive threshold collision-induced dissociation techniques. Analytical chemistry. vol 84. issue 17. 2013-01-11. PMID:22881454. |
in contrast, loss of intact gly and ala is observed as the lowest-energy cid pathway for the (gly)h(+)(18c6) and (ala)h(+)(18c6) complexes, respectively. |
2013-01-11 |
2023-08-12 |
Not clear |
| Nesrin M Hasan, Arnab Gupta, Elena Polishchuk, Corey H Yu, Roman Polishchuk, Oleg Y Dmitriev, Svetlana Lutsenk. Molecular events initiating exit of a copper-transporting ATPase ATP7B from the trans-Golgi network. The Journal of biological chemistry. vol 287. issue 43. 2012-12-28. PMID:22898812. |
mutating ser-340/341 in the n-atp7b individually or together to ala, gly, thr, or asp produced active protein and shifted the steady-state localization of atp7b to vesicles, independently of copper levels. |
2012-12-28 |
2023-08-12 |
Not clear |
| Ken Sakamoto, Kohei Sato, Akira Shigenaga, Kohei Tsuji, Shugo Tsuda, Hajime Hibino, Yuji Nishiuchi, Akira Otak. Synthetic procedure for N-Fmoc amino acyl-N-sulfanylethylaniline linker as crypto-peptide thioester precursor with application to native chemical ligation. The Journal of organic chemistry. vol 77. issue 16. 2012-12-19. PMID:22816612. |
furthermore, sealide peptides 7 possessing various c-terminal amino acids (gly, his, phe, ala, asn, ser, glu, and val) were shown to be of practical use in ncl chemistry. |
2012-12-19 |
2023-08-12 |
Not clear |
| Lu Lu, Pei Tong, Xiaowen Yu, Chungen Pan, Peng Zou, Ying-Hua Chen, Shibo Jian. HIV-1 variants with a single-point mutation in the gp41 pocket region exhibiting different susceptibility to HIV fusion inhibitors with pocket- or membrane-binding domain. Biochimica et biophysica acta. vol 1818. issue 12. 2012-12-11. PMID:22867851. |
in this study, we constructed pseudoviruses in which the ala at the position of 67 in the gp41 pocket region was substituted with asp, gly or ser, respectively, and found that these mutations rendered the viruses highly resistant to c34, but sensitive to t20. |
2012-12-11 |
2023-08-12 |
Not clear |
| Krystyna Dzierzbicka, Anna Wardowska, Małgorzata Rogalska, Piotr Trzonkowsk. New conjugates of muramyl dipeptide and nor-muramyl dipeptide linked to tuftsin and retro-tuftsin derivatives significantly influence their biological activity. Pharmacological reports : PR. vol 64. issue 1. 2012-12-07. PMID:22580539. |
the synthesis and biological activity of new conjugates of muramyl dipeptide (mdp) and nor-muramyl dipeptide (nor-mdp) with tuftsin and retro-tuftsin derivatives containing isopeptide bond between ε-amino group of lysine and carboxyl group of simple amino acids such as ala, gly and val are presented. |
2012-12-07 |
2023-08-12 |
Not clear |
| Anneli Wennman, Fredrik Jernerén, Mats Hamberg, Ernst H Oli. Catalytic convergence of manganese and iron lipoxygenases by replacement of a single amino acid. The Journal of biological chemistry. vol 287. issue 38. 2012-12-04. PMID:22822060. |
replacement of leu(336) with smaller hydrophobic residues (val, ala, and gly) shifted the oxygenation from c-13 toward c-9 with formation of 9s- and 9r-hydroperoxy metabolites of 18:2n-6 and 18:3n-3. |
2012-12-04 |
2023-08-12 |
Not clear |