| Publication |
Sentence |
Publish Date |
Extraction Date |
Species |
| Rajneesh, Jainendra Pathak, Vinod K Kannaujiya, Shailendra P Singh, Rajeshwar P Sinh. Codon usage analysis of photolyase encoding genes of cyanobacteria inhabiting diverse habitats. 3 Biotech. vol 7. issue 3. 2020-09-28. PMID:28664377. |
third position (g3c3) of codon controls incorporation of amino acids such as ala, phe, gly, leu, gln, pro, arg, ser, thr and tyr in photolyases from three habitats. |
2020-09-28 |
2023-08-13 |
Not clear |
| Shanwen Sun, Hui Ding, Donghua Wang, Shuguang Ha. Identifying Antifreeze Proteins Based on Key Evolutionary Information. Frontiers in bioengineering and biotechnology. vol 8. 2020-09-28. PMID:32274383. |
five out of the seven features had relatively high contributions to the discrimination of antifreeze and non-antifreeze proteins, as revealed by a principal component analysis, i.e., the conservation of the replacement of cys, trp, and gly in antifreeze proteins by ala, met, and ala, respectively, in the related proteins, and the conservation of the replacement of arg in non-antifreeze proteins by ser and arg in the related proteins. |
2020-09-28 |
2023-08-13 |
Not clear |
| Helena Jenzer, Leila Sadeghi-Reeve. Nutrigenomics-Associated Impacts of Nutrients on Genes and Enzymes With Special Consideration of Aromatase. Frontiers in nutrition. vol 7. 2020-09-28. PMID:32328497. |
biosynthesis of porphyrins in turn depends on the substrates succinate and glycine, as well as on a series of further enzymes, with ala synthetase as the rate-limiting step. |
2020-09-28 |
2023-08-13 |
human |
| Jiří Průša, Michal Cifr. Dataset of molecular dynamics simulation trajectories of amino-acid solutions with various force fields, water models and modified force field parameters. Data in brief. vol 30. 2020-09-28. PMID:32368577. |
we present molecular dynamics (md) trajectories of water solutions of eight zwitterionic amino-acids (l- form) glycine (gly), alanine (ala), proline (pro), threonine (thr), leucine (leu), glutamine (gln), histidine (his) and tyrosine (tyr) using various force field (opls-aa, amber99ff-sb, gromos96 54a7, charmm19) and water model (spc/e, tip3p) combinations. |
2020-09-28 |
2023-08-13 |
Not clear |
| Anastas Gospodinov, Dimiter Kunne. Universal Codons with Enrichment from GC to AU Nucleotide Composition Reveal a Chronological Assignment from Early to Late Along with LUCA Formation. Life (Basel, Switzerland). vol 10. issue 6. 2020-09-28. PMID:32516985. |
the amino acids encoded by gc-rich codons (ala, gly, arg, and pro) are those that contribute the most to the interactions with rna (if incorporated into short peptides). |
2020-09-28 |
2023-08-13 |
Not clear |
| Haruka Namikawa-Kanai, Teruo Miyazaki, Taisuke Matsubara, Shunsuke Shigefuku, Shotaro Ono, Eiji Nakajima, Yukio Morishita, Akira Honda, Kinya Furukawa, Norihiko Iked. Comparison of the amino acid profile between the nontumor and tumor regions in patients with lung cancer. American journal of cancer research. vol 10. issue 7. 2020-09-28. PMID:32775007. |
in the energic metabolism precursor categories, the glucogenic aas, which included the pyruvate precursors (ser, gly, thr, ala, and trp), the α-ketoglutarate precursors (glu, gln, and pro) and the succinyl-coa precursors (val, ile, and met) were significantly increased in the tumor region compared to in the nontumor region. |
2020-09-28 |
2023-08-13 |
Not clear |
| Xiuxia Sun, Linyan Yao, Caihong Fu, Liting Luo, Jie Wang, Jianxi Xia. Detection of target collagen peptides with single amino acid mutation using two fluorescent peptide probes. Journal of materials chemistry. B. vol 7. issue 48. 2020-09-18. PMID:31566640. |
the extent of fluorescence quenching is dependent on the identity of the residue replacing gly following the order of ala < ser < arg, while the gly-ala mutation causes the mildest fluorescence loss. |
2020-09-18 |
2023-08-13 |
Not clear |
| Yaffa Shalit, Inbal Tuvi-Ara. Side chain flexibility and the symmetry of protein homodimers. PloS one. vol 15. issue 7. 2020-09-15. PMID:32706779. |
these include: ile, pro, his, val, cys, leu, trp, tyr, phe, ala and gly. |
2020-09-15 |
2023-08-13 |
Not clear |
| Deepak M Kalaskar, Julie E Gough, Rein V Ulijn, William W Sampson, David J Scurr, Frank J Rutten, Morgan R Alexander, Catherine L R Merry, Stephen J Eichhor. Controlling cell morphology on amino acid-modified cellulose. Soft matter. vol 4. issue 5. 2020-09-10. PMID:32907139. |
hydrophilic (gly, ser), aliphatic (ala, val, leu, ile) and aromatic amino acids (phe, tyr, trp), coupled to the cellulose via esterification, give rise to different cell morphologies. |
2020-09-10 |
2023-08-13 |
Not clear |
| Shingo Kondo, Yu Kato, Satoshi Minagawa, Yoshikazu Sugimot. STAT1 upregulates glutaminase and modulates amino acids and glutathione metabolism. Biochemical and biophysical research communications. vol 523. issue 3. 2020-09-08. PMID:31948748. |
the abcb5/stat1 high-expressing clones showed higher cellular levels of ala, glu, and asp and lower cellular levels of phe, trp, leu, ile, gly, met, tyr, val, and his compared to the abcb5/stat1 low-expressing clones. |
2020-09-08 |
2023-08-13 |
human |
| Vappu Ylinen, Päivi Pylkkö, Jussi Peura, Jarmo Valaj. Ileal and total tract digestibility and nitrogen utilisation in blue fox ( Archives of animal nutrition. vol 74. issue 3. 2020-08-31. PMID:32159388. |
the decreasing dietary protein supply decreased the attd of most of the aa: threonine, tryptophan (trp), valine, alanine (ala), aspartic acid (asp), glutamic acid, glycine (gly), proline (pro), serine (ser) and total aa. |
2020-08-31 |
2023-08-13 |
Not clear |
| Pei-Yao Lu, Jing Wang, Shu-Geng Wu, Jun Gao, Yan Dong, Hai-Jun Zhang, Guang-Hai Q. Standardized ileal digestible amino acid and metabolizable energy content of wheat from different origins and the effect of exogenous xylanase on their determination in broilers. Poultry science. vol 99. issue 2. 2020-08-24. PMID:32036991. |
compared with the diet without xylanase, the added xylanase resulted in higher (p < 0.05) sid contents of met, lys, trp, arg, ile, leu, val, gly, asp, glu, pro, and ala; the sid aa values were raised by 1.96% (mean of all aa); and the amen content was significantly increased (+0.87 mj/kg) (p < 0.05). |
2020-08-24 |
2023-08-13 |
Not clear |
| Bryce A Thurston, Ethan P Shapera, John D Tovar, André Schleife, Andrew L Ferguso. Revealing the Sequence-Structure-Electronic Property Relation of Self-Assembling π-Conjugated Oligopeptides by Molecular and Quantum Mechanical Modeling. Langmuir : the ACS journal of surfaces and colloids. vol 35. issue 47. 2020-07-22. PMID:31657579. |
in this work, we combine all-atom classical molecular simulations with quantum mechanical electronic structure calculations to ascertain the sequence-structure-electronic property relationship within a family of asp-x-x-quaterthiophene-x-x-asp (dxx-ot4-xxd) oligopeptides in which x is one of the five amino acids {ala, phe, gly, ile, val} ({a, f, g, i, v}). |
2020-07-22 |
2023-08-13 |
Not clear |
| Hassan Mansouri-Torshizi, Sareh Zareian-Jahromi, Khatereh Abdi, Maryam Saeidifa. Nonionic but water soluble, [Glycine-Pd-Alanine] and [Glycine-Pd-Valine] complexes. Their synthesis, characterization, antitumor activities and rich DNA/HSA interaction studies. Journal of biomolecular structure & dynamics. vol 37. issue 13. 2020-07-06. PMID:30284510. |
two novel, neutral and water soluble pd(ii) complexes of formula [pd(gly)(ala)] ( |
2020-07-06 |
2023-08-13 |
Not clear |
| Xie Mengdi, Dai Haibo, Liu Jiaxin, Xue Zhe, Chen Yi, Liang Xuan, Mou Haiyan, Sun Hui, Ao Tianqi, Li Yunzhen, Chen Wenqin. Metabolomics reveals the "Invisible" detoxification mechanisms of Amaranthus hypochondriacus at three ages upon exposure to different levels of cadmium. Ecotoxicology and environmental safety. vol 195. 2020-06-29. PMID:32213366. |
k472 at the intermediate stage of vegetative growth had the strongest tolerance to cd with the combined action of ala, asp and glu metabolism, purine metabolism, gly, ser and thr metabolism and pro and arg metabolism. |
2020-06-29 |
2023-08-13 |
Not clear |
| Brian J Kerr, Shelby M Curry, Brett C Ramire. Lack of interactive effects between diet composition and acid addition with drying method on amino acid digestibility values in porcine ileal digesta. Journal of animal science. vol 98. issue 2. 2020-06-16. PMID:31993632. |
od resulted in a higher aid for all aa (p ≤ 0.09) except for ile, thr, val, ala, asp, glu, and gly. |
2020-06-16 |
2023-08-13 |
Not clear |
| Chao Wu, Samantha A Wynne, Nathan E Thomas, Eva-Maria Uhlemann, Christopher G Tate, Katherine A Henzler-Wildma. Identification of an Alternating-Access Dynamics Mutant of EmrE with Impaired Transport. Journal of molecular biology. vol 431. issue 15. 2020-06-05. PMID:31158365. |
we performed extensive scanning mutagenesis by changing every amino acid residue to val, ala, or gly, and then screening the drug resistance phenotypes of the resulting mutants. |
2020-06-05 |
2023-08-13 |
Not clear |
| Yvonne Piotrowski, Kristel Berg, David Paul Klebl, Ingar Leiros, Atle Noralf Larse. Characterization of an intertidal zone metagenome oligoribonuclease and the role of the intermolecular disulfide bond for homodimer formation and nuclease activity. FEBS open bio. vol 9. issue 10. 2020-05-04. PMID:31420950. |
substitution of the cys110 residue with either gly or ala hampered the dimer formation and severely affected the enzyme's ability to act on rna. |
2020-05-04 |
2023-08-13 |
Not clear |
| A S Vasilchenko, V A Gritsenko, D B Kosyan, E A Rogozhi. A Low-Molecular-Weight Compound Derived from Human Leukocytes Determines a Bactericidal Activity of the Interferon Preparation. Probiotics and antimicrobial proteins. vol 11. issue 3. 2020-04-06. PMID:30215182. |
edman sequencing identified phenylthiohydantoin (pth) derivatives which consisted a set of preliminary (asp, glu, gly, and ala) and minor amino acids (leu and thr) at equimolar ratio. |
2020-04-06 |
2023-08-13 |
human |
| Alan J Situ, Tobias S Ulme. Universal principles of membrane protein assembly, composition and evolution. PloS one. vol 14. issue 8. 2020-03-03. PMID:31415673. |
for eukarya, breaks in f(n) trends of packing (ala, gly and pro), polar, and hydrophobic residues identify different mp assembly principles for 2≤n≤7, 8≤n≤12 and n≥13. |
2020-03-03 |
2023-08-13 |
Not clear |