| Publication |
Sentence |
Publish Date |
Extraction Date |
Species |
| Eileen S Hwang, Geetha Thiagarajan, Avanish S Parmar, Barbara Brodsk. Interruptions in the collagen repeating tripeptide pattern can promote supramolecular association. Protein science : a publication of the Protein Society. vol 19. issue 5. 2010-08-23. PMID:20340134. |
the most stable and least perturbed structure is seen for the 5-residue interruption peptide, whose sequence corresponds to a gly to ala missense mutation, such as those leading to collagen genetic diseases. |
2010-08-23 |
2023-08-12 |
Not clear |
| Jorge P López-Alonso, Miguel A Pardo-Cea, Irene Gómez-Pinto, Irene Fernández, Avijit Chakrabartty, Enrique Pedroso, Carlos González, Douglas V Laurent. Putative one-pot prebiotic polypeptides with ribonucleolytic activity. Chemistry (Weinheim an der Bergstrasse, Germany). vol 16. issue 18. 2010-08-18. PMID:20232309. |
kia7, a peptide with a highly restricted set of amino acids (lys, ile, ala, gly and tyr), adopts a specifically folded structure. |
2010-08-18 |
2023-08-12 |
Not clear |
| Jorge P López-Alonso, Miguel A Pardo-Cea, Irene Gómez-Pinto, Irene Fernández, Avijit Chakrabartty, Enrique Pedroso, Carlos González, Douglas V Laurent. Putative one-pot prebiotic polypeptides with ribonucleolytic activity. Chemistry (Weinheim an der Bergstrasse, Germany). vol 16. issue 18. 2010-08-18. PMID:20232309. |
some amino acids, including lys, ile, ala, gly and his, form under the same putative prebiotic conditions, whereas different conditions are needed for producing tyr, phe and trp. |
2010-08-18 |
2023-08-12 |
Not clear |
| Jorge P López-Alonso, Miguel A Pardo-Cea, Irene Gómez-Pinto, Irene Fernández, Avijit Chakrabartty, Enrique Pedroso, Carlos González, Douglas V Laurent. Putative one-pot prebiotic polypeptides with ribonucleolytic activity. Chemistry (Weinheim an der Bergstrasse, Germany). vol 16. issue 18. 2010-08-18. PMID:20232309. |
herein, we report the 3d structure and conformational stability of the peptide kia7h, which is composed of only lys, ile, ala, gly and his. |
2010-08-18 |
2023-08-12 |
Not clear |
| Olivier Mozziconacci, Bruce A Kerwin, Christian Schöneic. Reversible hydrogen transfer between cysteine thiyl radical and glycine and alanine in model peptides: covalent H/D exchange, radical-radical reactions, and L- to D-Ala conversion. The journal of physical chemistry. B. vol 114. issue 19. 2010-08-12. PMID:20415493. |
the reversible intramolecular hydrogen transfer reaction of peptide cys thiyl radicals with gly and ala residues was studied in model peptides, where thiyl radicals were either generated through photochemical cleavage of disulfide bonds or through the reaction of cys thiol with (*)ch(3) or ch(3)c(*)o radicals, or both, generated through photolysis of acetone. |
2010-08-12 |
2023-08-12 |
Not clear |
| Wenjun Zhang, Megan L Bolla, Daniel Kahne, Christopher T Wals. A three enzyme pathway for 2-amino-3-hydroxycyclopent-2-enone formation and incorporation in natural product biosynthesis. Journal of the American Chemical Society. vol 132. issue 18. 2010-08-05. PMID:20394362. |
first, succinyl-coa and glycine are condensed to generate 5-aminolevulinate (ala) by a dedicated plp-dependent ala synthase (orf34). |
2010-08-05 |
2023-08-12 |
Not clear |
| b' A Sari\\xc4\\x87, T Hrenar, M Malis, N Dosli\\xc4\\x8. Quantum mechanical study of secondary structure formation in protected dipeptides. Physical chemistry chemical physics : PCCP. vol 12. issue 18. 2010-08-03. PMID:20428547.' |
an extensive computational study of the conformational preferences of three capped dipeptides: ac-xxx-phe-nh(2), xxx = gly, ala, val is reported. |
2010-08-03 |
2023-08-12 |
Not clear |
| Katherine H Miller, Jessica R Karr, Susan Marquse. A hinge region cis-proline in ribonuclease A acts as a conformational gatekeeper for C-terminal domain swapping. Journal of molecular biology. vol 400. issue 3. 2010-07-30. PMID:20471398. |
substitution of p114 with residues that strongly prefer a trans peptide bond (ala, gly) results in significant population of the c-terminal domain-swapped dimer under near-physiological conditions (ph 8.0, 37 degrees c). |
2010-07-30 |
2023-08-12 |
human |
| Fan Jiang, Wei Han, Yun-Dong W. Influence of side chain conformations on local conformational features of amino acids and implication for force field development. The journal of physical chemistry. B. vol 114. issue 17. 2010-07-21. PMID:20392111. |
in addition to gly, ala, and pro, the phi, psi distribution (ramachandran plot) of each amino acid is analyzed with respect to three side chain conformers: g+ (chi(1) approximately -60 degrees), g- (chi(1) approximately 60 degrees), and t (chi(1) approximately 180 degrees). |
2010-07-21 |
2023-08-12 |
Not clear |
| Fan Jiang, Wei Han, Yun-Dong W. Influence of side chain conformations on local conformational features of amino acids and implication for force field development. The journal of physical chemistry. B. vol 114. issue 17. 2010-07-21. PMID:20392111. |
on the basis of the chi(1), phi, psi conformational preferences, the amino acids in addition to gly, pro, and ala can be divided into five types: (1) ordinary amino acids, (2) ser, (3) asp and asn, (4) val and ile, and (5) thr, each with distinguished chi(1) rotamers. |
2010-07-21 |
2023-08-12 |
Not clear |
| Qing Xiao, Feiran Zhang, Benjamin A Nacev, Jun O Liu, Dehua Pe. Protein N-terminal processing: substrate specificity of Escherichia coli and human methionine aminopeptidases. Biochemistry. vol 49. issue 26. 2010-07-21. PMID:20521764. |
earlier studies revealed that metaps require amino acids containing small side chains (e.g., gly, ala, ser, cys, pro, thr, and val) as the p1' residue, but their specificity at positions p2' and beyond remains incompletely defined. |
2010-07-21 |
2023-08-12 |
human |
| Dinesh Kumar, Subhradip Paul, Ramakrishna V Hosu. BEST-HNN and 2D-(HN)NH experiments for rapid backbone assignment in proteins. Journal of magnetic resonance (San Diego, Calif. : 1997). vol 204. issue 1. 2010-07-16. PMID:20236846. |
each of these experiments which produce anchor points for gly, ala, ser/thr residues, can be recorded in less than an hour. |
2010-07-16 |
2023-08-12 |
human |
| T A Woyengo, E Kiarie, C M Nyachot. Metabolizable energy and standardized ileal digestible amino acid contents of expeller-extracted canola meal fed to broiler chicks. Poultry science. vol 89. issue 6. 2010-07-08. PMID:20460665. |
expeller-extracted canola meal had greater (p<0.05) standardized ileal digestible contents of gly, leu, ser, thr, asp, and glu and tended to have greater (p<0.10) standardized ileal digestible contents of ile, lys, phe, ala, and tyr than secm. |
2010-07-08 |
2023-08-12 |
chicken |
| Zhigang Xu, John C DiCesare, Paul W Baure. Parallel synthesis of an oligomeric imidazole-4,5-dicarboxamide library. Journal of combinatorial chemistry. vol 12. issue 2. 2010-07-07. PMID:20170086. |
the final compounds incorporate nonpolar amino acids (leu, phe, trp), polar amino acids (ser, asp, arg), and neutral amino acids (gly, ala), and were designed to be useful in screening for inhibitors of protein-protein interactions. |
2010-07-07 |
2023-08-12 |
Not clear |
| I Sangwan, M R O'bria. Characterization of delta-Aminolevulinic Acid Formation in Soybean Root Nodules. Plant physiology. vol 98. issue 3. 2010-07-06. PMID:16668729. |
glutamate-dependent ala formation activity by soybean (glycine max) in nodules was maximal at ph 6.5 to 7.0 and at 55 to 60 degrees c. a low level of the plant activity was detected in uninfected roots and was 50-fold greater in nodules from 17-day-old plants; this apparent stimulation correlated with increases in both plant and bacterial hemes in nodules compared with the respective asymbiotic cells. |
2010-07-06 |
2023-08-12 |
Not clear |
| Elena Sebokova, Andreas D Christ, Haiyan Wang, Sabine Sewing, Jesse Z Dong, John Taylor, Michael A Cawthorne, Michael D Culle. Taspoglutide, an analog of human glucagon-like Peptide-1 with enhanced stability and in vivo potency. Endocrinology. vol 151. issue 6. 2010-06-30. PMID:20382695. |
taspoglutide contains alpha-aminoisobutyric acid substitutions replacing ala(8) and gly(35) of hglp-1(7-36)nh2. |
2010-06-30 |
2023-08-12 |
human |
| O Klein, H Senge. Two Biosynthetic Pathways to delta-Aminolevulinic Acid in a Pigment Mutant of the Green Alga, Scenedesmus obliquus. Plant physiology. vol 62. issue 1. 2010-06-29. PMID:16660443. |
this amount could be increased up to 15 times by feeding precursors and cofactors.incubation with [u-(14)c]glutamate, [1-(14)c]glutamate, and [2-(14)c]glycine yielded significantly labeled ala, whereas [1-(14)c]glycine did not label the ala specifically. |
2010-06-29 |
2023-08-12 |
Not clear |
| G M Hass, J E Der. Purification and characterization of the carboxypeptidase isoinhibitors from potatoes. Plant physiology. vol 64. issue 6. 2010-06-29. PMID:16661085. |
isoinhibitor i was shown to be identical to ii except for two replacements, ser-30 --> ala and arg-32 --> gly. |
2010-06-29 |
2023-08-12 |
Not clear |
| T Foley, V Dzelzkalns, S I Beal. delta-Aminolevulinic Acid Synthase of Euglena gracilis: Regulation of Activity. Plant physiology. vol 70. issue 1. 2010-06-29. PMID:16662450. |
delta-aminolevulinic acid (ala), a key precursor of the tetrapyrroles heme and chlorophyll, is capable of being synthesized by two different routes in cells of the unicellular green alga euglena gracilis: from the intact carbon skeleton of glutamate, and via the condensation of glycine and succinyl coa, mediated by the enzyme ala synthase. |
2010-06-29 |
2023-08-12 |
human |
| J D Weinstein, S I Beal. Biosynthesis of Protoheme and Heme a Precursors Solely from Glutamate in the Unicellular Red Alga Cyanidium caldarium. Plant physiology. vol 74. issue 1. 2010-06-29. PMID:16663369. |
two biosynthetic routes to the heme, chlorophyll, and phycobilin precursor, delta-aminolevulinic acid (ala) are known: conversion of the intact five-carbon skeleton of glutamate, and ala synthase-catalyzed condensation of glycine plus succinyl-coenzyme a. |
2010-06-29 |
2023-08-12 |
Not clear |