| Publication |
Sentence |
Publish Date |
Extraction Date |
Species |
| Loreta Cimbalistiene, Willy Lehnert, Kirsi Huoponen, Vaidutis Kucinska. First reported case of lysinuric protein intolerance (LPI) in Lithuania, confirmed biochemically and by DNA analysis. Journal of applied genetics. vol 48. issue 3. 2007-10-18. PMID:17666782. |
laboratory findings included slight hyperammonaemia, high plasma citr, ala, gly, glu, ser levels, as well as citrullinuria, lysinuria, glutaminuria, alaninuria, argininuria, prolinuria, hydroxyprolinuria, ornithinuria, and orotic aciduria. |
2007-10-18 |
2023-08-12 |
Not clear |
| Youhei Urushida, Masahiro Nakano, Satoru Matsuda, Naoko Inoue, Satoru Kanai, Naho Kitamura, Takashi Nishino, Kei Kamin. Identification and functional characterization of a novel barnacle cement protein. The FEBS journal. vol 274. issue 16. 2007-10-16. PMID:17683335. |
homologous genes were isolated from balanus albicostatus and b. improvisus, and their amino acid compositions showed strong resemblance to that of m. rosa, with six amino acids, ser, thr, ala, gly, val and lys, comprising 66-70% of the total, suggesting that such a biased amino acid composition may be important for the function of this protein. |
2007-10-16 |
2023-08-12 |
Not clear |
| S B Kim, I S Seo, M A Khan, K S Ki, W S Lee, H J Lee, H S Shin, H S Ki. Enzymatic hydrolysis of heated whey: iron-binding ability of peptides and antigenic protein fractions. Journal of dairy science. vol 90. issue 9. 2007-10-04. PMID:17699019. |
alcalase f-1 had higher ala (18.38%), lys (17.97%), and phe (16.58%) concentrations, whereas the presence of pro, gly, and tyr was not detected. |
2007-10-04 |
2023-08-12 |
Not clear |
| Noureddine Atmane, Julien Dairou, Delphine Flatters, Marta Martins, Benjamin Pluvinage, Philippe Derreumaux, Jean-Marie Dupret, Fernando Rodrigues-Lim. The conserved glycine/alanine residue of the active-site loop containing the putative acetylCoA-binding motif is essential for the overall structural integrity of Mesorhizobium loti arylamine N-acetyltransferase 1. Biochemical and biophysical research communications. vol 361. issue 1. 2007-09-24. PMID:17658468. |
here we show that a small amino acid (such as gly or ala) at this position is important not only for maintaining the functions of the active-site p-loop but, more surprisingly, also important for maintaining the overall structural integrity of nat enzymes. |
2007-09-24 |
2023-08-12 |
Not clear |
| Anand Anbarasu, Sudha Anand, M Madan Babu, Rao Sethumadhava. Investigations on C-H...pi interactions in RNA binding proteins. International journal of biological macromolecules. vol 41. issue 3. 2007-09-06. PMID:17420044. |
the donor atom contribution to c-hcdots, three dots, centeredpi interactions was mainly from phe, tyr, trp, pro, gly, lys, his and ala residues. |
2007-09-06 |
2023-08-12 |
Not clear |
| Anand Anbarasu, Sudha Anand, M Madan Babu, Rao Sethumadhava. Investigations on C-H...pi interactions in RNA binding proteins. International journal of biological macromolecules. vol 41. issue 3. 2007-09-06. PMID:17420044. |
the secondary structure preference analysis of c-hcdots, three dots, centeredpi interacting residues showed that, arg, gln, glu, his, ile, leu, lys, met, phe and tyr preferred to be in helix, while ala, asp, cys, gly, trp and val preferred to be in strand conformation. |
2007-09-06 |
2023-08-12 |
Not clear |
| Jean-Philippe Godin, Magali Faure, Denis Breuille, Gérard Hopfgartner, Laurent-Bernard Fa. Determination of 13C isotopic enrichment of valine and threonine by GC-C-IRMS after formation of the N(O,S)-ethoxycarbonyl ethyl ester derivatives of the amino acids. Analytical and bioanalytical chemistry. vol 388. issue 4. 2007-09-06. PMID:17468859. |
overall isotopic precision was studied for eleven standard amino acid derivatives (those of val, ala, leu, iso, gly, pro, asp, thr, ser, met, and phe) and was assessed at 0.32 per thousand. |
2007-09-06 |
2023-08-12 |
rat |
| Jean-Philippe Godin, Magali Faure, Denis Breuille, Gérard Hopfgartner, Laurent-Bernard Fa. Determination of 13C isotopic enrichment of valine and threonine by GC-C-IRMS after formation of the N(O,S)-ethoxycarbonyl ethyl ester derivatives of the amino acids. Analytical and bioanalytical chemistry. vol 388. issue 4. 2007-09-06. PMID:17468859. |
the (13)c isotopic measurement was then extended to the other amino acids (ala, val, leu, iso, gly, pro, thr, and phe) at natural abundance for in-vivo samples. |
2007-09-06 |
2023-08-12 |
rat |
| Baoxian Shi, Weihua Huang, Jieke Chen. Determination of neurotransmitters in PC 12 cells by microchip electrophoresis with fluorescence detection. Electrophoresis. vol 28. issue 10. 2007-08-30. PMID:17447240. |
o-phthaldialdehyde (opa, lambda(ex) = 340 nm) was employed to label the catecholamine neurotransmitters such as dopamine (da), norepinephrine (ne), and amino acid neurotransmitters including alanine (ala), taurine (tau), glycine (gly), glutamic acid (glu), and aspartic acid (asp). |
2007-08-30 |
2023-08-12 |
rat |
| Baoxian Shi, Weihua Huang, Jieke Chen. Determination of neurotransmitters in PC 12 cells by microchip electrophoresis with fluorescence detection. Electrophoresis. vol 28. issue 10. 2007-08-30. PMID:17447240. |
the separation of seven derivatized neurotransmitters was successfully performed in mce and the detection limits (s/n = 3) for da, ne, ala, tau, gly, glu, and asp were 0.85, 0.49, 0.23, 0.15, 0.13, 0.18, and 0.29 fmol, respectively. |
2007-08-30 |
2023-08-12 |
rat |
| Baoxian Shi, Weihua Huang, Jieke Chen. Determination of neurotransmitters in PC 12 cells by microchip electrophoresis with fluorescence detection. Electrophoresis. vol 28. issue 10. 2007-08-30. PMID:17447240. |
the system was then successfully applied for separation and determination of neurotransmitters in rat pheochromocytoma (pc 12) cells, and the average amounts of analyte per cell from a cell population were 2.5 fmol for da, 3.3 fmol for ala, 8.2 fmol for tau, 4.0 fmol for gly, and 1.9 fmol for glu, respectively. |
2007-08-30 |
2023-08-12 |
rat |
| Michael A Bryan, Joseph W Brauner, Gloria Anderle, Carol R Flach, Barbara Brodsky, Richard Mendelsoh. FTIR studies of collagen model peptides: complementary experimental and simulation approaches to conformation and unfolding. Journal of the American Chemical Society. vol 129. issue 25. 2007-08-07. PMID:17550251. |
the approach is demonstrated through accurate simulation of the experimental amide i contour in solution for both a standard triple helix, (pro-pro-gly)10, and a second peptide with a gly --> ala substitution in the middle of the chain that models the effect of a mutation in the native collagen sequence. |
2007-08-07 |
2023-08-12 |
Not clear |
| James B Thoden, Hazel M Holde. Active site geometry of glucose-1-phosphate uridylyltransferase. Protein science : a publication of the Protein Society. vol 16. issue 7. 2007-07-30. PMID:17567737. |
residues involved in anchoring the ligand to the active site include the polypeptide chain backbone atoms of ala 20, gly 21, gly 117, gly 180, and ala 214, and the side chains of glu 36, gln 112, asp 143, glu 201, and lys 202. |
2007-07-30 |
2023-08-12 |
Not clear |
| V Sabareesh, R S Ranganayaki, S Raghothama, M P Bopanna, Hemalatha Balaram, M C Srinivasan, P Balara. Identification and characterization of a library of microheterogeneous cyclohexadepsipeptides from the fungus Isaria. Journal of natural products. vol 70. issue 5. 2007-07-16. PMID:17477570. |
the structure of an isariin (isariin a) investigated by nmr spectroscopy indicated the presence of a hybrid alphabeta c11 turn, formed by the beta-hydroxy acid and glycine residues and a d leu-l ala type ii' beta-turn. |
2007-07-16 |
2023-08-12 |
Not clear |
| Myriam E Villegas, Jorge A Vila, Harold A Scherag. Effects of side-chain orientation on the 13C chemical shifts of antiparallel beta-sheet model peptides. Journal of biomolecular NMR. vol 37. issue 2. 2007-06-29. PMID:17180547. |
the dependence of the (13)c chemical shift on side-chain orientation was investigated at the density functional level for a two-strand antiparallel beta-sheet model peptide represented by the amino acid sequence ac-(ala)(3)-x-(ala)(12)-nh(2) where x represents any of the 17 naturally occurring amino acids, i.e., not including alanine, glycine and proline. |
2007-06-29 |
2023-08-12 |
Not clear |
| Mey Khalili, Adam Liwo, Franciszek Rakowski, Paweł Grochowski, Harold A Scherag. Molecular dynamics with the united-residue model of polypeptide chains. I. Lagrange equations of motion and tests of numerical stability in the microcanonical mode. The journal of physical chemistry. B. vol 109. issue 28. 2007-06-21. PMID:16852727. |
test runs on the gly(10) sequence (in which u(rot) is not present) and on the ala(10) sequence with u(rot) replaced by a simple numerically stable harmonic potential confirmed this observation; oscillations of the total energy were observed only up to the time step of 7.335 fs, and some drift in the total energy or instability of the trajectories started to appear in long-time (2 ns and longer) trajectories only for the time step of 9.78 fs. |
2007-06-21 |
2023-08-12 |
Not clear |
| Shu Jin Chan, Satoe Nakagawa, Donald F Steine. Complementation analysis demonstrates that insulin cross-links both alpha subunits in a truncated insulin receptor dimer. The Journal of biological chemistry. vol 282. issue 18. 2007-06-14. PMID:17339314. |
midi-hirs containing ala(14), ala(64), or gly(714) mutations were fused with myc or flag epitopes at the c terminus and were expressed separately by transient transfection. |
2007-06-14 |
2023-08-12 |
Not clear |
| Seung Woo Lee, Young Moon Kim, Hong Seok Choi, Jai Myung Yang, Cheong Song Cho. Primary structure of myostracal prism soluble protein (MPSP) in oyster shell, Crassostrea gigas. The protein journal. vol 25. issue 4. 2007-06-13. PMID:16967318. |
the deduced protein was composed of a high proportion of gly and asp, typifying a calcium-binding protein for shell formation, and a relatively high proportion of val, ala and ile, typifying an adhesive protein. |
2007-06-13 |
2023-08-12 |
Not clear |
| Shibasish Chowdhury, Hongxing Lei, Yong Dua. Denatured-state ensemble and the early-stage folding of the G29A mutant of the B-domain of protein A. The journal of physical chemistry. B. vol 109. issue 18. 2007-06-06. PMID:16852080. |
this was in complete agreement with the recent kinetic measurements in which mutations of these residues to gly and ala substantially increased the folding rates by as much as 60 times. |
2007-06-06 |
2023-08-12 |
Not clear |
| Iori Maeda, Noriaki Mizoiri, Maria Portia P Briones, Kouji Okamot. Induction of macrophage migration through lactose-insensitive receptor by elastin-derived nonapeptides and their analog. Journal of peptide science : an official publication of the European Peptide Society. vol 13. issue 4. 2007-06-06. PMID:17394124. |
to investigate the role of the sixth residue of the nonapeptides, seven analog peptides in which leu or phe is substituted by ile, val, ala, gly, pro, lys or glu were synthesized and their macrophage migration activity tested. |
2007-06-06 |
2023-08-12 |
Not clear |