| Publication |
Sentence |
Publish Date |
Extraction Date |
Species |
| José Carlo Pires Penteado, Marilda Rigobello-Masini, Cleber Wanderlei Liria, M Terêsa Machini Miranda, Jorge Cesar Masin. Fluorimetric determination of intra- and extracellular free amino acids in the microalgae Tetraselmis gracilis (Prasinophyceae) using monolithic column in reversed phase mode. Journal of separation science. vol 32. issue 15-16. 2009-10-22. PMID:19569093. |
the main constituents of the intracellular dissolved free amino acids (dfaas) in the exponential growth phase were arginine (arg), asparagine (asn), alanine (ala), aspartic acid (asp), glutamic acid (glu), serine (ser), glycine (gly), glutamine (gln), and leucine (leu). |
2009-10-22 |
2023-08-12 |
Not clear |
| José Carlo Pires Penteado, Marilda Rigobello-Masini, Cleber Wanderlei Liria, M Terêsa Machini Miranda, Jorge Cesar Masin. Fluorimetric determination of intra- and extracellular free amino acids in the microalgae Tetraselmis gracilis (Prasinophyceae) using monolithic column in reversed phase mode. Journal of separation science. vol 32. issue 15-16. 2009-10-22. PMID:19569093. |
the major amino acids excreted to the media were valine (val), ala, ser, and gly. |
2009-10-22 |
2023-08-12 |
Not clear |
| L Martínez-Martínez, C González-Santesteban, M Agustí-Martí, E Pérez-Ranz, O de la Calle-Martí. A novel HLA-Cw*07 variant, HLA-Cw*0760, identified by sequence-based typing in a bone marrow donor. Tissue antigens. vol 74. issue 2. 2009-10-08. PMID:19392791. |
the cw*0760 allele has two nucleotide changes from cw*070101 at positions 341 and 343 in exon 2, resulting in two amino acid changes from asp to ala (codon 90: gac-->gcc) and gly to arg (codon 91: ggg-->agg). |
2009-10-08 |
2023-08-12 |
Not clear |
| Sahayog Narayan Jamda. A novel aminopeptidase from Burkholderia cepacia specific for acidic amino acids. FEMS microbiology letters. vol 295. issue 2. 2009-10-01. PMID:19456865. |
the only other member characterized so far from this family is a broad-specificity aminopeptidase of sphingomonas capsulata (scapap) with preference for gly or ala residues. |
2009-10-01 |
2023-08-12 |
Not clear |
| S Lemosquet, E Delamaire, H Lapierre, J W Blum, J L Peyrau. Effects of glucose, propionic acid, and nonessential amino acids on glucose metabolism and milk yield in Holstein dairy cows. Journal of dairy science. vol 92. issue 7. 2009-09-28. PMID:19528601. |
isoenergetic infusions (5.15 mcal/d of digestible energy) of glc into the duodenum (7.7 mol/d), c3 into the rumen (14.1 mol/d), or neaam into the duodenum (in mol/d; ala: 1.60; asp: 0.60; glu: 5.94; gly: 1.22; ser: 2.45) were given as a supplement to the ctrl diet. |
2009-09-28 |
2023-08-12 |
Not clear |
| M Larsen, N B Kristense. Effect of abomasal glucose infusion on splanchnic amino acid metabolism in periparturient dairy cows. Journal of dairy science. vol 92. issue 7. 2009-09-28. PMID:19528608. |
except for ala, aa removed by the liver might be used primarily for noncatabolic processes, as exemplified by the 16% of hepatic gly uptake accounted for as urinary hippurate. |
2009-09-28 |
2023-08-12 |
Not clear |
| Hemajit Singh, Shandar Ahma. Context dependent reference states of solvent accessibility derived from native protein structures and assessed by predictability analysis. BMC structural biology. vol 9. 2009-09-25. PMID:19397821. |
this normalization is typically attained by assuming a highest exposure conformation based on extended state of that residue when it is surrounded by ala or gly on both sides i.e. |
2009-09-25 |
2023-08-12 |
Not clear |
| Gianfranco Balboni, Claudio Trapella, Yusuke Sasaki, Akihiro Ambo, Ewa D Marczak, Lawrence H Lazarus, Severo Salvador. Influence of the side chain next to C-terminal benzimidazole in opioid pseudopeptides containing the Dmt-Tic pharmacophore. Journal of medicinal chemistry. vol 52. issue 17. 2009-09-25. PMID:19642675. |
interesting results were obtained: (1) only gly, ala, and asp resulted in delta agonism, (2) phe yielded delta antagonism, (3) and all other residues except glu (devoid of any activity) gave mu agonism. |
2009-09-25 |
2023-08-12 |
Not clear |
| Yu Suzuki, Rui Takahashi, Tadashi Shimizu, Masataka Tansho, Kazuo Yamauchi, Mike P Williamson, Tetsuo Asakur. Intra- and intermolecular effects on 1H chemical shifts in a silk model Peptide determined by high-field solid state 1H NMR and empirical calculations. The journal of physical chemistry. B. vol 113. issue 29. 2009-09-24. PMID:19569641. |
two peaks with equal intensity were observed for the amide protons of (ag)15 in silk i, whereas only one broad peak was observed for silk ii, reflecting a difference of 1.1 ppm in ala hn shift between silk i and silk ii, but a difference of only 0.2 ppm in gly hn shift. |
2009-09-24 |
2023-08-12 |
Not clear |
| Carles Majós, Carles Aguilera, Mònica Cos, Angels Camins, Ana P Candiota, Teresa Delgado-Goñi, Alex Samitier, Sara Castañer, Juan J Sánchez, David Mato, Juan J Acebes, Carles Arú. In vivo proton magnetic resonance spectroscopy of intraventricular tumours of the brain. European radiology. vol 19. issue 8. 2009-09-16. PMID:19277673. |
characteristic trends were found for some groups: high glx and ala in meningiomas (p < 0.001 and p < 0.01, respectively), high mobile lipids in metastasis (p < 0.001), high cho in pnet (p < 0.001), high mi + gly in ependymoma (p < 0.001), high nac (p < 0.01) in the absence of the normal brain parenchyma pattern in colloid cysts, and high mi/gly and ala in central neurocytoma. |
2009-09-16 |
2023-08-12 |
Not clear |
| Mattias K Andersson, Mattias Enoksson, Maike Gallwitz, Lars Hellma. The extended substrate specificity of the human mast cell chymase reveals a serine protease with well-defined substrate recognition profile. International immunology. vol 21. issue 1. 2009-08-31. PMID:19073880. |
in p3', the small aliphatic aa ala, val and gly were frequently observed. |
2009-08-31 |
2023-08-12 |
mouse |
| Angkana Saikeur, Wanna Choorit, Poonsuk Prasertsan, Duangporn Kantachote, Ken Sasak. Influence of precursors and inhibitor on the production of extracellular 5-aminolevulinic acid and biomass by Rhodopseudomonas palustris KG31. Bioscience, biotechnology, and biochemistry. vol 73. issue 5. 2009-08-28. PMID:19420716. |
the precursors were added to the medium at the beginning of cultivation, while the inhibitor was added after 24 h. statistical analysis indicated that levulinic acid (la) has a positive effect on ala production while glycine has a negative effect on biomass production. |
2009-08-28 |
2023-08-12 |
Not clear |
| Angkana Saikeur, Wanna Choorit, Poonsuk Prasertsan, Duangporn Kantachote, Ken Sasak. Influence of precursors and inhibitor on the production of extracellular 5-aminolevulinic acid and biomass by Rhodopseudomonas palustris KG31. Bioscience, biotechnology, and biochemistry. vol 73. issue 5. 2009-08-28. PMID:19420716. |
in order to enhance both ala and biomass products, the most suitable medium was vfa medium supplemented with 3.0 mm glycine and 10 mm la, giving ala and biomass of 182.91 microm and 3.1 gdcw/l within 54 h. |
2009-08-28 |
2023-08-12 |
Not clear |
| MinKyung Yi, Yinghong Ma, Jeremy Yates, Stanley M Lemo. Trans-complementation of an NS2 defect in a late step in hepatitis C virus (HCV) particle assembly and maturation. PLoS pathogens. vol 5. issue 5. 2009-08-26. PMID:19412343. |
substitution of ser-168 with ala (or gly) ablated production of infectious virus by cells transfected with a chimeric viral rna (hj3-5) containing core-ns2 sequences from the genotype 1a h77 virus within the background of genotype 2a jfh1 virus. |
2009-08-26 |
2023-08-12 |
Not clear |
| V Punitha, S Sundar Raman, R Parthasarathi, V Subramanian, J Raghava Rao, Balachandran Unni Nair, T Ramasam. Molecular dynamics investigations on the effect of D amino acid substitution in a triple-helix structure and the stability of collagen. The journal of physical chemistry. B. vol 113. issue 26. 2009-08-18. PMID:19518060. |
the destabilization energy per d ala substitution is 7.87 kcal/mol, which is similar to the value for the gly-->ala mutation in collagen. |
2009-08-18 |
2023-08-12 |
Not clear |
| V Punitha, S Sundar Raman, R Parthasarathi, V Subramanian, J Raghava Rao, Balachandran Unni Nair, T Ramasam. Molecular dynamics investigations on the effect of D amino acid substitution in a triple-helix structure and the stability of collagen. The journal of physical chemistry. B. vol 113. issue 26. 2009-08-18. PMID:19518060. |
since the gly-->ala mutation is involved in genetic disorders such as osteogenesis imperfecta (oi), the l-->d configurational change may produce a similar effect on collagen. |
2009-08-18 |
2023-08-12 |
Not clear |
| Fan Gao, Kaleeckal G Harikumar, Maoqing Dong, Polo C-H Lam, Patrick M Sexton, Arthur Christopoulos, Andrew Bordner, Ruben Abagyan, Laurence J Mille. Functional importance of a structurally distinct homodimeric complex of the family B G protein-coupled secretin receptor. Molecular pharmacology. vol 76. issue 2. 2009-08-17. PMID:19429716. |
of these, covalent stabilization of receptor homodimers through positions of gly(243), ile(247), and ala(250) resulted in a gtp-sensitive high-affinity state of the receptor, whereas the same procedure with ala(246) and phe(240) mutants resulted in a gtp-insensitive lower affinity state. |
2009-08-17 |
2023-08-12 |
Not clear |
| N G Esipova, L E Ragulina, L I Davydova, V M Lobachev, V Iu Makeev, V G Bogush, V G Tumanian, V G Debabo. [Left helix of polyproline II type and genesis of beta-structures in spidroins 1 and 2 and their recombinant analogs]. Biofizika. vol 54. issue 3. 2009-08-11. PMID:19569497. |
at the same time, the regions of the sequence including ala and gly are predicted as helical-containing (with alpha-helices and left-helices of polyproline ii type). |
2009-08-11 |
2023-08-12 |
spider |
| Hong Zhang, Jeff Beckman, Jimin Wang, William Konigsber. RB69 DNA polymerase mutants with expanded nascent base-pair-binding pockets are highly efficient but have reduced base selectivity. Biochemistry. vol 48. issue 29. 2009-08-05. PMID:19522539. |
accordingly, we replaced residues l561, y567, and s565 in the nbp with ala, ala, and gly, respectively. |
2009-08-05 |
2023-08-12 |
Not clear |
| Endah S Sulistijo, Kevin R Mackenzi. Structural basis for dimerization of the BNIP3 transmembrane domain. Biochemistry. vol 48. issue 23. 2009-07-30. PMID:19415897. |
small residues ala 176, gly 180, and gly 184 allow close approach of essentially ideal helices in a geometry that supports intermonomer hydrogen bond formation between the side chains of his 173 and ser 172. |
2009-07-30 |
2023-08-12 |
Not clear |