| Publication |
Sentence |
Publish Date |
Extraction Date |
Species |
| Petr Bour, Joohyun Kim, Josef Kapitan, Robert P Hammer, Rong Huang, Ling Wu, Timothy A Keiderlin. Vibrational circular dichroism and IR spectral analysis as a test of theoretical conformational modeling for a cyclic hexapeptide. Chirality. vol 20. issue 10. 2008-12-09. PMID:18506832. |
stepwise full dft simulation of spectra was done for various sequences with the same backbone geometry but based on (1) solely gly residues, (2) ala substitution except gly and pro, and (3) complete sequences with side chains. |
2008-12-09 |
2023-08-12 |
Not clear |
| Mina Jahandideh, Seyyed Mohsen Hosseini Barkooie, Samad Jahandideh, Parviz Abdolmaleki, Mohammad Mehdi Movahedi, Somayyeh Hoseini, Ebrahim Barzegari Asadabadi, Fatemeh Javani Jouni, Zahra Karami, Nader Hodjati Firoozabad. Elucidating the protein cold-adaptation: Investigation of the parameters enhancing protein psychrophilicity. Journal of theoretical biology. vol 255. issue 1. 2008-12-05. PMID:18718477. |
in addition, our results provided new quantitative information about the trends in the substitution preference of ile, phe, tyr, lys, arg, his, glu and leu with most of amino acids and substitution avoidance of gly, thr and ala with most of amino acids. |
2008-12-05 |
2023-08-12 |
Not clear |
| Ravi Pratap Barnwal, Ashok K Rout, Hanudatta S Atreya, Kandala V R Char. Identification of C-terminal neighbours of amino acid residues without an aliphatic 13Cgamma as an aid to NMR assignments in proteins. Journal of biomolecular NMR. vol 41. issue 4. 2008-11-17. PMID:18633715. |
we propose a methodology that uses gft (3,2)d cb(caco)nnh experiment to rapidly collect the data and readily identify six amino acid residue types (ala, asn, asp, cys, gly and ser) in any given protein. |
2008-11-17 |
2023-08-12 |
Not clear |
| Diby Paul, Sudha Nai. Stress adaptations in a Plant Growth Promoting Rhizobacterium (PGPR) with increasing salinity in the coastal agricultural soils. Journal of basic microbiology. vol 48. issue 5. 2008-11-14. PMID:18702073. |
as a means of salt tolerance, the strain de novo -synthesized, the osmolytes, ala, gly, glu, ser, thr, and asp in their cytosol. |
2008-11-14 |
2023-08-12 |
Not clear |
| Olivier R Bolduc, Jean-François Masso. Monolayers of 3-mercaptopropyl-amino acid to reduce the nonspecific adsorption of serum proteins on the surface of biosensors. Langmuir : the ACS journal of surfaces and colloids. vol 24. issue 20. 2008-11-13. PMID:18823086. |
the nonspecific adsorption of serum proteins on the 3-mpa-amino acids increases in the following order: asp < asn < ser < met < glu < gln < thr < gly < his < cys < arg < phe < trp < val < pro < ile < leu < ala < tyr. |
2008-11-13 |
2023-08-12 |
cattle |
| Marilda Rigobello-Masini, José C P Penteado, Cleber W Liria, M Terêsa M Miranda, Jorge C Masin. Implementing stepwise solvent elution in sequential injection chromatography for fluorimetric determination of intracellular free amino acids in the microalgae Tetraselmis gracilis. Analytica chimica acta. vol 628. issue 2. 2008-11-12. PMID:18929000. |
at a flow rate of 10 microl s(-1) a 25 mm long-column was able to separate aspartic acid (asp), glutamic acid (glu), asparagine (asn), serine (ser), glutamine (gln), glycine (gly), threonine (thr), citruline (ctr), arginine (arg), alanine (ala), tyrosine (tyr), phenylalanine (phe), ornithine (orn) and lysine (lys) with resolution >1.2 as well as methionine (met) and valine (val) with resolution of 0.6. |
2008-11-12 |
2023-08-12 |
Not clear |
| Yushi Chi, Huibin Zhang, Wenlong Huang, Jinpei Zhou, Yinghong Zhou, Hai Qian, Shuaijian N. Microwave-assisted solid phase synthesis, PEGylation, and biological activity studies of glucagon-like peptide-1(7-36) amide. Bioorganic & medicinal chemistry. vol 16. issue 16. 2008-10-29. PMID:18656368. |
in order to improve its stability, we replaced the enzymatic hydrolyzation position ala(8)with gly and replaced ala(30) with cys firstly. |
2008-10-29 |
2023-08-12 |
Not clear |
| Irena Jelínkova, Vojtech Vávra, Marie Jindrichova, Tomas Obsil, Hana W Zemkova, Hana Zemkova, Stanko S Stojilkovi. Identification of P2X(4) receptor transmembrane residues contributing to channel gating and interaction with ivermectin. Pflugers Archiv : European journal of physiology. vol 456. issue 5. 2008-10-27. PMID:18427835. |
the receptor function was unchanged by mutations in 29 different residues, and among them, the ivm effects were altered in gln(36), leu(40), val(43), val(47), trp(50), asn(338), gly(342), leu(346), ala(349), and ile(356) mutants. |
2008-10-27 |
2023-08-12 |
rat |
| Irena Jelínkova, Vojtech Vávra, Marie Jindrichova, Tomas Obsil, Hana W Zemkova, Hana Zemkova, Stanko S Stojilkovi. Identification of P2X(4) receptor transmembrane residues contributing to channel gating and interaction with ivermectin. Pflugers Archiv : European journal of physiology. vol 456. issue 5. 2008-10-27. PMID:18427835. |
in contrast, the ivm-independent hits met(31), tyr(42), gly(45), val(49), gly(340), leu(343), ala(344), gly(347), thr(350), asp(354), and val(357) map on the opposite side of their helices, probably facing the pore of receptor or protein and playing important roles in gating. |
2008-10-27 |
2023-08-12 |
rat |
| Numan Oezguen, Bin Zhou, Surendra S Negi, Ovidiu Ivanciuc, Catherine H Schein, Gilles Labesse, Werner Brau. Comprehensive 3D-modeling of allergenic proteins and amino acid composition of potential conformational IgE epitopes. Molecular immunology. vol 45. issue 14. 2008-10-22. PMID:18621419. |
the amino acids ala, ser, asn, gly and particularly lys have a high propensity to occur in ige binding sites. |
2008-10-22 |
2023-08-12 |
Not clear |
| Huizhong Chen, Haiyan Xu, Ohgew Kweon, Siwei Chen, Carl E Cernigli. Functional role of Trp-105 of Enterococcus faecalis azoreductase (AzoA) as resolved by structural and mutational analysis. Microbiology (Reading, England). vol 154. issue Pt 9. 2008-10-09. PMID:18757799. |
the replacement of trp-105 by the small side-chain amino acids ala and gly caused complete loss of both affinity for fmn and enzyme activity. |
2008-10-09 |
2023-08-12 |
Not clear |
| Han-Pil Choi, Young-Mi Lee, Cheol-Won Yun, Ha-Chin Sun. Extracellular 5-aminolevulinic acid production by Escherichia coli containing the Rhodopseudomonas palustris KUGB306 hemA gene. Journal of microbiology and biotechnology. vol 18. issue 6. 2008-10-06. PMID:18600059. |
this enzyme catalyzes the condensation of glycine and succinyl-coa to yield ala in the presence of the cofactor pyridoxal 5'- phosphate. |
2008-10-06 |
2023-08-12 |
Not clear |
| Han-Pil Choi, Young-Mi Lee, Cheol-Won Yun, Ha-Chin Sun. Extracellular 5-aminolevulinic acid production by Escherichia coli containing the Rhodopseudomonas palustris KUGB306 hemA gene. Journal of microbiology and biotechnology. vol 18. issue 6. 2008-10-06. PMID:18600059. |
ala production was significantly enhanced by the addition of succinate together with glycine in the medium. |
2008-10-06 |
2023-08-12 |
Not clear |
| Tariq Perwez, Danyal Hami, Valerie F Maples, Zhao Min, Bi-Cheng Wang, Sidney R Kushne. Intragenic suppressors of temperature-sensitive rne mutations lead to the dissociation of RNase E activity on mRNA and tRNA substrates in Escherichia coli. Nucleic acids research. vol 36. issue 16. 2008-10-06. PMID:18689439. |
each single amino acid substitution (gly-->ala at amino acid 172; phe --> cys at amino acid 186 and arg --> leu at amino acid 187) mapped within the 5' sensor region of the rnase e protein. |
2008-10-06 |
2023-08-12 |
Not clear |
| Jianqiang Zhang, Peter J Timoney, N James MacLachlan, William H McCollum, Udeni B R Balasuriy. Persistent equine arteritis virus infection in HeLa cells. Journal of virology. vol 82. issue 17. 2008-09-29. PMID:18579588. |
it was further demonstrated that recombinant viruses with substitutions in the minor structural proteins e and gp2 or gp3 and gp4 were unable to establish persistent infection in hela-l cells but that recombinant viruses with combined substitutions in the e (ser53-->cys and val55-->ala), gp2 (leu15-->ser, trp31-->arg, val87-->leu, and ala112-->thr), gp3 (ser115-->gly and leu135-->pro), and gp4 (tyr4-->his and ile109-->phe) proteins or with a single point mutation in the gp5 protein (pro98-->leu) were able to establish persistent infection in hela-l cells. |
2008-09-29 |
2023-08-12 |
human |
| Henryk Wince. Hydration energies of deprotonated amino acids from gas phase equilibria measurements. Journal of the American Society for Mass Spectrometry. vol 19. issue 8. 2008-09-26. PMID:18556212. |
(h(2)o) were obtained from gas-phase equilibria determinations for aa = gly, ala, val, pro, phe, lys, met, trp, gln, arg, and asp. |
2008-09-26 |
2023-08-12 |
Not clear |
| Eva Eylert, Jennifer Schär, Sonja Mertins, Regina Stoll, Adelbert Bacher, Werner Goebel, Wolfgang Eisenreic. Carbon metabolism of Listeria monocytogenes growing inside macrophages. Molecular microbiology. vol 69. issue 4. 2008-09-24. PMID:18627458. |
when [u-(13)c(6)]glucose was provided during the infection period, (13)c label was found again in ala, asp and glu from host and bacterial protein, but also in ser, gly, thr and val from the bacterial fraction. |
2008-09-24 |
2023-08-12 |
Not clear |
| Masanori Onda, Richard Beers, Laiman Xiang, Satoshi Nagata, Qing-Cheng Wang, Ira Pasta. An immunotoxin with greatly reduced immunogenicity by identification and removal of B cell epitopes. Proceedings of the National Academy of Sciences of the United States of America. vol 105. issue 32. 2008-09-16. PMID:18678888. |
this was accomplished by mutation of specific large hydrophilic amino acids (arg, gln, glu, lys) to ala, ser, or gly. |
2008-09-16 |
2023-08-12 |
mouse |
| N V Mozhina, O A Burmistrova, D V Pupov, G N Rudenskaia, Ia E Dunaevskiĭ, I V Demidiuk, S V Kostro. [Isolation and properties of cysteine protease from Serratia proteamaculans 94]. Bioorganicheskaia khimiia. vol 34. issue 3. 2008-09-12. PMID:18672676. |
unlike gingipains r, spcp displays a double substrate specificity and cleaves bonds formed by carboxylic groups of arg, hydrophobic amino acid residues (val, leu, ala, tyr, and phe), pro, and gly. |
2008-09-12 |
2023-08-12 |
Not clear |
| Alexandra-Zoi Andreou, Marian Vanko, Lydia Bezakova, Ivo Feussne. Properties of a mini 9R-lipoxygenase from Nostoc sp. PCC 7120 and its mutant forms. Phytochemistry. vol 69. issue 9. 2008-09-10. PMID:18439634. |
kinetic measurements revealed that substitution of ala by gly or val did not significantly influence the reaction characteristics, while the a162i mutant showed a reduced vmax. |
2008-09-10 |
2023-08-12 |
Not clear |