| Publication |
Sentence |
Publish Date |
Extraction Date |
Species |
| Soniya S Rao, Namitha Brijit Bejoy, Shridhar P Gejj. Hydrogen Bonding, (1)H NMR, and Molecular Electron Density Topographical Characteristics of Ionic Liquids Based on Amino Acid Cations and Their Ester Derivatives. The journal of physical chemistry. A. vol 119. issue 32. 2016-05-12. PMID:26192454. |
consequently, the hierarchy in binding energies of [aa][no3] ion pairs and their ester analogues turns out to be [gly] > [ala] > [ser] ∼ [val] ∼ [ile] > [leu] ∼ [thr] > [pro]. |
2016-05-12 |
2023-08-13 |
Not clear |
| Seong K Kim, Akhalesh K Shakya, Seongman Kim, Dennis J O'Callagha. Functional Characterization of the Serine-Rich Tract of Varicella-Zoster Virus IE62. Journal of virology. vol 90. issue 2. 2016-05-11. PMID:26537679. |
when the serine and acidic residues of the srt were replaced with ala, leu, and gly, trans-activation activities of the modified ie62 proteins ie62-srtΔse and ie62-srtΔac were reduced to 46% and 29% of wild-type activity, respectively. |
2016-05-11 |
2023-08-13 |
human |
| Takefumi Kuranaga, Hiroyuki Mutoh, Yusuke Sesoko, Tomomi Goto, Shigeki Matsunaga, Masayuki Inou. Elucidation and Total Synthesis of the Correct Structures of Tridecapeptides Yaku'amides A and B. Synthesis-Driven Stereochemical Reassignment of Four Amino Acid Residues. Journal of the American Chemical Society. vol 137. issue 29. 2016-05-10. PMID:26146759. |
yaku'amides a (1) and b (2) possess four α,β-dehydroamino acid residues in their linear tridecapeptide sequence and differ in their residue-3 (gly for 1 and ala for 2). |
2016-05-10 |
2023-08-13 |
Not clear |
| Bosko M Stojanovski, Gloria C Ferreir. Asn-150 of Murine Erythroid 5-Aminolevulinate Synthase Modulates the Catalytic Balance between the Rates of the Reversible Reaction. The Journal of biological chemistry. vol 290. issue 52. 2016-05-10. PMID:26511319. |
5-aminolevulinate synthase (alas) catalyzes the first step in mammalian heme biosynthesis, the pyridoxal 5'-phosphate (plp)-dependent and reversible reaction between glycine and succinyl-coa to generate coa, co2, and 5-aminolevulinate (ala). |
2016-05-10 |
2023-08-13 |
Not clear |
| Bosko M Stojanovski, Gloria C Ferreir. Asn-150 of Murine Erythroid 5-Aminolevulinate Synthase Modulates the Catalytic Balance between the Rates of the Reversible Reaction. The Journal of biological chemistry. vol 290. issue 52. 2016-05-10. PMID:26511319. |
although wild-type alas catalyzes the conversion of ala into the quinonoid intermediate at a rate 6.3-fold slower than the formation of the same quinonoid intermediate from glycine and succinyl-coa, the n150f variant catalyzes the forward reaction at a mere 1.2-fold faster rate than that of the reverse reaction, and the n150h variant reverses the rate values with a 1.7-fold faster rate for the reverse reaction than that for the forward reaction. |
2016-05-10 |
2023-08-13 |
Not clear |
| Marc Rodriguez-Garcia, Andrew J Surman, Geoffrey J T Cooper, Irene Suárez-Marina, Zied Hosni, Michael P Lee, Leroy Croni. Formation of oligopeptides in high yield under simple programmable conditions. Nature communications. vol 6. 2016-05-02. PMID:26442968. |
having established the formation of glycine homo-oligopeptides, we then demonstrated the co-condensation of glycine with eight other amino acids (ala, asp, glu, his, lys, pro, thr and val), incorporating a range of side-chain functionality. |
2016-05-02 |
2023-08-13 |
Not clear |
| Da-Wei Li, Dan Meng, Rafael Brüschweile. Reliable resonance assignments of selected residues of proteins with known structure based on empirical NMR chemical shift prediction. Journal of magnetic resonance (San Diego, Calif. : 1997). vol 254. 2016-04-08. PMID:25863893. |
the method, which works best for gly, ala, ser, and thr residues, provides assignments that serve as anchor points for additional assignments by both manual and semi-automated methods or they can be directly used for further studies, e.g. |
2016-04-08 |
2023-08-13 |
Not clear |
| Supratim Sengupta, Paul G Higg. Pathways of Genetic Code Evolution in Ancient and Modern Organisms. Journal of molecular evolution. vol 80. issue 5-6. 2016-03-11. PMID:26054480. |
the current arrangement of the standard code suggests that it evolved from a four-column code in which gly, ala, asp, and val were the earliest encoded amino acids. |
2016-03-11 |
2023-08-13 |
Not clear |
| Temple F Smith, Hyman Hartma. The evolution of Class II Aminoacyl-tRNA synthetases and the first code. FEBS letters. vol 589. issue 23. 2016-02-29. PMID:26472323. |
the earliest form of this code likely coded predominantly glycine (gly), proline (pro), alanine (ala) and "lysine"/aspartic acid (lys/asp). |
2016-02-29 |
2023-08-13 |
Not clear |
| Mayank, Vikas Jaita. Interaction model of steviol glycosides from Stevia rebaudiana (Bertoni) with sweet taste receptors: A computational approach. Phytochemistry. vol 116. 2016-02-02. PMID:26021732. |
the binding pattern indicated that asn 44, ans 52, ala 345, pro 343, ile 352, gly 346, gly 47, ala 354, ser 336, thr 326 and ser 329 are the main interacting amino acid residues in case of t1r2 and arg 56, glu 105, asp 215, asp 216, glu 148, asp 258, lys 255, ser 104, glu 217, leu 51, arg 52 for t1r3, respectively. |
2016-02-02 |
2023-08-13 |
human |
| E A Awad, I Zulkifli, A F Soleimani, T C Lo. Individual non-essential amino acids fortification of a low-protein diet for broilers under the hot and humid tropical climate. Poultry science. vol 94. issue 11. 2016-02-01. PMID:26371331. |
eight isocaloric (3,017 kcal/kg) experimental diets were formulated and fed to male broiler chicks from d 1-21 as follows: 1) 22.2% crude protein (cp) (positive control; pc); 2) 16.2% cp + mixture essential amino acids (eaa) to meet or exceed the national research council (1994) recommendations (negative control; nc); 3) nc + glycine (gly) to equal the total glycine + serine level in the pc; diets 4 through 7 were obtained by supplementing nc diet with individual glutamic acid, proline, alanine, or aspartic acid (glu, pro, ala, or asp, respectively); 8) nc + neaa (gly + glu + pro + ala + asp) to equal the total level of these neaa in the pc. |
2016-02-01 |
2023-08-13 |
Not clear |
| Dongdong Mu, Manuel Montalbán-López, Jingjing Deng, Oscar P Kuiper. Lantibiotic Reductase LtnJ Substrate Selectivity Assessed with a Collection of Nisin Derivatives as Substrates. Applied and environmental microbiology. vol 81. issue 11. 2016-01-25. PMID:25795677. |
ltnj successfully hydrogenated peptides when hydrophobic residues (leu, ile, phe, and ala) were flanking the intermediate dehydroalanine, while those in which dehydroalanine was flanked by one or two polar residues (ser, thr, glu, lys, and asn) or gly were either less prone to be modified by ltnj or not modified at all. |
2016-01-25 |
2023-08-13 |
Not clear |
| Erika K Ross, Aimee N Winter, Heather M Wilkins, Whitney A Sumner, Nathan Duval, David Patterson, Daniel A Linsema. A Cystine-Rich Whey Supplement (Immunocal(®)) Delays Disease Onset and Prevents Spinal Cord Glutathione Depletion in the hSOD1(G93A) Mouse Model of Amyotrophic Lateral Sclerosis. Antioxidants (Basel, Switzerland). vol 3. issue 4. 2016-01-20. PMID:26785244. |
here, we investigated the effects of a unique non-denatured whey protein supplement, immunocal(®), in the transgenic gly position 93 to ala (g93a) mutant hsod1 (hsod1(g93a)) mouse model of als. |
2016-01-20 |
2023-08-13 |
mouse |
| Ji-Yeon Chun, Yeon-Ji Jo, Sang-Gi Min, Geun-Pyo Hon. Effect of High Pressure on the Porcine Placenral Hydrolyzing Activity of Pepsin, Trypsin and Chymotrypsin. Korean journal for food science of animal resources. vol 34. issue 1. 2016-01-14. PMID:26760740. |
there were some differences in amino acid compositions of the hydrolysates, nevertheless, the peptides were mainly composed of glycine (gly), alanine (ala), hydroxyproline (hyp) and proline (pro). |
2016-01-14 |
2023-08-13 |
Not clear |
| Yeon-Ji Jo, Jae-Hyeong Kim, Kyung-Hun Jung, Sang-Gi Min, Ji-Yeon Chu. Effect of Sub- and Super-critical Water Treatment on Physicochemical Properties of Porcine Skin. Korean journal for food science of animal resources. vol 35. issue 1. 2016-01-14. PMID:26761798. |
determination of amino acid profile revealed that the content of glu (22.5%) and pro (30%) was higher after super-h2o treatment than after sub-h2o treatment, whereas the content of gly (28%) and ala (13.1%) was higher after sub-h2o treatment. |
2016-01-14 |
2023-08-13 |
Not clear |
| T Suwandecha, T Srichana, N Balekar, T Nakpheng, K Pangsomboo. Novel antimicrobial peptide specifically active against Porphyromonas gingivalis. Archives of microbiology. vol 197. issue 7. 2016-01-08. PMID:26041027. |
a peptide that contained three cationic amino acids (arg, his and lys), two anionic amino acids (glu and asp), hydrophobic amino acids residues (leu, ile, val, ala and pro) and hydrophilic residues (ser and gly) was obtained and named pep-7. |
2016-01-08 |
2023-08-13 |
human |
| Saumen Chakraborty, Michael J Polen, Kelly N Chacón, Tiffany D Wilson, Yang Yu, Julian Reed, Mark J Nilges, Ninian J Blackburn, Yi L. Binuclear Cu(A) Formation in Biosynthetic Models of Cu(A) in Azurin Proceeds via a Novel Cu(Cys)2His Mononuclear Copper Intermediate. Biochemistry. vol 54. issue 39. 2016-01-08. PMID:26352296. |
here, we report the mechanism of cu(a) assembly using variants of glu114xcuaaz (x = gly, ala, leu, or gln), the backbone carbonyl of which acts as a ligand to the cu(a) site, with a major focus on characterization of the novel intermediate ix. |
2016-01-08 |
2023-08-13 |
Not clear |
| b' Sonja Mili\\xc4\\x87, Jelena Bogdanovi\\xc4\\x87 Pristov, Dragosav Mutavd\\xc5\\xbei\\xc4\\x87, Aleksandar Savi\\xc4\\x87, Mihajlo Spasi\\xc4\\x87, Ivan Spasojevi\\xc4\\x8. The relationship of physicochemical properties to the antioxidative activity of free amino acids in Fenton system. Environmental science & technology. vol 49. issue 7. 2016-01-04. PMID:25764263.' |
the rank order according to aa was: trp > norleucine > phe, leu > ile > his >3,4-dihydroxyphenylalanine, arg > val > lys, tyr, pro > hydroxyproline > α-aminobutyric acid > gln, thr, ser > glu, ala, gly, asn, asp. |
2016-01-04 |
2023-08-13 |
Not clear |
| Luke F Gamon, Joses G Nathanael, Bethany I Taggert, Fraser A Henry, Jana Bogena, Uta Will. Fragmentation-Rearrangement of Peptide Backbones Mediated by the Air Pollutant NO2 (.). Chemistry (Weinheim an der Bergstrasse, Germany). vol 21. issue 42. 2015-12-30. PMID:26333002. |
the relative rate of the fragmentation-rearrangement depends on the nature of the amino acids and decreases with increasing steric bulk at the α carbon in the order gly>ala>val. |
2015-12-30 |
2023-08-13 |
Not clear |
| Lior Doron, Shunit Coppenhagen-Glazer, Yara Ibrahim, Amir Eini, Ronit Naor, Graciela Rosen, Gilad Bachrac. Identification and characterization of fusolisin, the Fusobacterium nucleatum autotransporter serine protease. PloS one. vol 9. issue 10. 2015-12-22. PMID:25357190. |
the mature serine protease was found to cleave after thr, gly, ala and leu residues at the p1 position. |
2015-12-22 |
2023-08-13 |
Not clear |