| Publication |
Sentence |
Publish Date |
Extraction Date |
Species |
| A Ano, H Funahashi, K Nakao, Y Nishizaw. Effect of glycine on 5-aminolevulinic acid biosynthesis in heterotrophic culture of Chlorella regularis YA-603. Journal of bioscience and bioengineering. vol 88. issue 1. 2005-10-31. PMID:16232574. |
moreover, when a second glycine addition was made during the culture, the ala concentration increased by about 1.5 times compared to that obtained with one glycine addition. |
2005-10-31 |
2023-08-12 |
Not clear |
| A Ano, H Funahashi, K Nakao, Y Nishizaw. Effect of glycine on 5-aminolevulinic acid biosynthesis in heterotrophic culture of Chlorella regularis YA-603. Journal of bioscience and bioengineering. vol 88. issue 1. 2005-10-31. PMID:16232574. |
from these results, it is suggested that the shemin pathway contributes to ala production, and that addition of glycine in the heterotrophic culture of c. regularis ya-603 can significantly increase the amount of ala produced. |
2005-10-31 |
2023-08-12 |
Not clear |
| S Nishikawa, K Watanabe, T Tanaka, N Miyachi, Y Hotta, Y Murook. Rhodobacter sphaeroides mutants which accumulate 5-aminolevulinic acid under aerobic and dark conditions. Journal of bioscience and bioengineering. vol 87. issue 6. 2005-10-27. PMID:16232557. |
while cr-286 required light illumination for ala production, cr-386 was able to accumulate 1.5 mm ala in the presence of 50 mm glucose, 60 mm glycine, 15 mm levulinic acid and 1.0% (w/v) yeast extract under conditions of agitation in the absence of light. |
2005-10-27 |
2023-08-12 |
Not clear |
| S Nishikawa, K Watanabe, T Tanaka, N Miyachi, Y Hotta, Y Murook. Rhodobacter sphaeroides mutants which accumulate 5-aminolevulinic acid under aerobic and dark conditions. Journal of bioscience and bioengineering. vol 87. issue 6. 2005-10-27. PMID:16232557. |
in the presence of 50 mm glucose, 60 mm glycine, 5 mm levulinic acid and 1.0% (w/v) yeast extract, the mutant strain cr-520, derived from strain cr-450, and strain cr-606, derived from strain cr-520, accumulated 8.1 mm and 11.2 mm ala, respectively. |
2005-10-27 |
2023-08-12 |
Not clear |
| S Nishikawa, K Watanabe, T Tanaka, N Miyachi, Y Hotta, Y Murook. Rhodobacter sphaeroides mutants which accumulate 5-aminolevulinic acid under aerobic and dark conditions. Journal of bioscience and bioengineering. vol 87. issue 6. 2005-10-27. PMID:16232557. |
in batch fermentation, the strain cr-606 accumulated 20 mm ala over 18 h after the addition of glycine, levulinic acid, glucose and yeast extract. |
2005-10-27 |
2023-08-12 |
Not clear |
| Yoshihiko Onda, Kikukatsu It. Changes in the composition of xylem sap during development of the spadix of skunk cabbage (Symplocarpus foetidus). Bioscience, biotechnology, and biochemistry. vol 69. issue 6. 2005-10-26. PMID:15973047. |
however, concentrations of sugars (sucrose, glucose, and fructose), organic acids (malate and succinate), and amino acids (asp, asn, glu, gln, gly, and ala) in xylem sap decreased remarkably in post-thermogenic plants. |
2005-10-26 |
2023-08-12 |
Not clear |
| Marco Crimi, Sara Galbiati, Monica Sciacco, Andreina Bordoni, Maria Grazia Natali, Monica Raimondi, Nereo Bresolin, Giacomo Pietro Com. Mitochondrial-DNA nucleotides G4298A and T10010C as pathogenic mutations: the confirmation in two new cases. Mitochondrion. vol 3. issue 5. 2005-10-20. PMID:16120360. |
we identified two different heteroplasmic mutations in the mtdna of two subjects: g4298a in the trna(ala) (alanine) gene and t10010c in the trna(gly) (glycine), both of which have been reported previously. |
2005-10-20 |
2023-08-12 |
human |
| Mikołaj Olejniczak, Taraka Dale, Richard P Fahlman, Olke C Uhlenbec. Idiosyncratic tuning of tRNAs to achieve uniform ribosome binding. Nature structural & molecular biology. vol 12. issue 9. 2005-10-17. PMID:16116437. |
an analysis of chimeras composed of trna(2)(ala) and various amounts of either trna(3)(gly) or trna(2)(arg) indicates that the presence of the parental 32-38 nucleotide pair is sufficient to restore ribosome binding of the transplanted anticodons. |
2005-10-17 |
2023-08-12 |
Not clear |
| Mohamed Ali Borgi, Karima Srih-Belguith, Mamdouh Ben Ali, Monia Mezghani, Samuel Tranier, Richard Haser, Samir Beja. Glucose isomerase of the Streptomyces sp. SK strain: purification, sequence analysis and implication of alanine 103 residue in the enzyme thermostability and acidotolerance. Biochimie. vol 86. issue 8. 2005-10-07. PMID:15388233. |
the presence of an ala residue at position 103 in skgi is especially remarkable, since the same amino-acid was found at the equivalent position in the extremely thermostable gis from thermus thermophilus and thermotoga neapolitana; whereas a gly was found in the majority of less thermostable gis from streptomyces. |
2005-10-07 |
2023-08-12 |
Not clear |
| Johann F Görgens, Willem H van Zyl, Johannes H Knoetze, Bärbel Hahn-Hägerda. Amino acid supplementation improves heterologous protein production by Saccharomyces cerevisiae in defined medium. Applied microbiology and biotechnology. vol 67. issue 5. 2005-09-29. PMID:15630584. |
the addition of a balanced mixture of the preferred amino acids, ala, arg, asn, glu, gln and gly, improved both biomass and xylanase production, whereas several other individual amino acids inhibited biomass and/or xylanase production. |
2005-09-29 |
2023-08-12 |
Not clear |
| Eiji Ohmae, Yukari Fukumizu, Masahiro Iwakura, Kunihiko Gekk. Effects of mutation at methionine-42 of Escherichia coli dihydrofolate reductase on stability and function: implication of hydrophobic interactions. Journal of biochemistry. vol 137. issue 5. 2005-09-26. PMID:15944418. |
methionine-42, distal to the active site of escherichia coli dihydrofolate reductase, was substituted by site-directed mutagenesis with 14 amino acids (ala, cys, glu, gln, gly, his, ile, leu, pro, ser, thr, trp, tyr, and val) to elucidate its role in the stability and function of this enzyme. |
2005-09-26 |
2023-08-12 |
Not clear |
| Claudine Menard, H Robert Horvitz, Stephen Canno. Chimeric mutations in the M2 segment of the 5-hydroxytryptamine-gated chloride channel MOD-1 define a minimal determinant of anion/cation permeability. The Journal of biological chemistry. vol 280. issue 30. 2005-09-22. PMID:15878844. |
in common with other anionic lgics (glycine receptors and gaba(a) receptors), the selectivity triple mutant in the pore-forming m2 segment (proline insertion, ala --> glu substitution at the central ring, and thr --> val at the hydrophobic ring) converted the selectivity of mod-1 from anionic to cationic. |
2005-09-22 |
2023-08-12 |
caenorhabditis_elegans |
| Peter J Alaimo, Zachary A Knight, Kevan M Shoka. Targeting the gatekeeper residue in phosphoinositide 3-kinases. Bioorganic & medicinal chemistry. vol 13. issue 8. 2005-09-19. PMID:15781393. |
kinases that possess a small side chain at this position (thr, ala, or gly) are readily targeted by structurally diverse classes of inhibitors, whereas kinases that possess a larger residue at this position are broadly resistant. |
2005-09-19 |
2023-08-12 |
Not clear |
| Nobuhide Doi, Koichi Kakukawa, Yuko Oishi, Hiroshi Yanagaw. High solubility of random-sequence proteins consisting of five kinds of primitive amino acids. Protein engineering, design & selection : PEDS. vol 18. issue 6. 2005-09-13. PMID:15928003. |
here, we have constructed a library of random-sequence proteins consisting of only five amino acids, ala, gly, val, asp and glu, which are believed to have been the most abundant in the prebiotic environment. |
2005-09-13 |
2023-08-12 |
Not clear |
| Ossama B Kashlan, Shaohu Sheng, Thomas R Kleyma. On the interaction between amiloride and its putative alpha-subunit epithelial Na+ channel binding site. The Journal of biological chemistry. vol 280. issue 28. 2005-09-12. PMID:15908426. |
because diverse residues at alpha583, such as asn, gln, ser, gly, thr, and ala, have similar amiloride binding affinities, our results suggest that the wild type ser side chain is not important for amiloride binding. |
2005-09-12 |
2023-08-12 |
Not clear |
| Maria Füzesi, Kay-Eberhard Gottschalk, Moshit Lindzen, Alla Shainskaya, Bernhard Küster, Haim Garty, Steven J D Karlis. Covalent cross-links between the gamma subunit (FXYD2) and alpha and beta subunits of Na,K-ATPase: modeling the alpha-gamma interaction. The Journal of biological chemistry. vol 280. issue 18. 2005-09-02. PMID:15743768. |
dst and edc induced two beta-gamma cross-links, a major one at the extracellular surface within the segment gly(143)-ser(302) of the beta subunit and another within ala(1)-arg(142). |
2005-09-02 |
2023-08-12 |
rat |
| Sebastian Thude, Birgit Classe. High molecular weight constituents from roots of Echinacea pallida: an arabinogalactan-protein and an arabinan. Phytochemistry. vol 66. issue 9. 2005-08-23. PMID:15896372. |
the protein part (3.9% w/w) of the agp is rich in hyp, ser, ala, thr, glu, asp and gly. |
2005-08-23 |
2023-08-12 |
Not clear |
| Yasuhiro Mie, Fumio Mizutani, Tadayuki Uno, Chiho Yamada, Katsuhiko Nishiyama, Isao Taniguch. Direct electrochemistry of engineered cytochrome b562 molecules with a ligand binding pocket. Journal of inorganic biochemistry. vol 99. issue 5. 2005-08-18. PMID:15833348. |
when the methionine-7 (met-7) residue, which coordinates to the heme iron as an axial ligand, of the wild-type cytochrome b562 was replaced by an ala or gly residue, a water molecule bound to the heme iron and the electron transfer rate constants decreased to 1.3 x 10(-3) and 1.8 x 10(-3) cm s(-1), respectively. |
2005-08-18 |
2023-08-12 |
Not clear |
| Yasuhiro Mie, Fumio Mizutani, Tadayuki Uno, Chiho Yamada, Katsuhiko Nishiyama, Isao Taniguch. Direct electrochemistry of engineered cytochrome b562 molecules with a ligand binding pocket. Journal of inorganic biochemistry. vol 99. issue 5. 2005-08-18. PMID:15833348. |
the midpoint potential of cytochrome b562 was shifted negatively by approximately 135 mv by replacing met-7 with ala or gly. |
2005-08-18 |
2023-08-12 |
Not clear |
| Qinxue Hu, Kelby B Napier, John O Trent, Zixuan Wang, Stephen Taylor, George E Griffin, Stephen C Peiper, Robin J Shattoc. Restricted variable residues in the C-terminal segment of HIV-1 V3 loop regulate the molecular anatomy of CCR5 utilization. Journal of molecular biology. vol 350. issue 4. 2005-08-15. PMID:15964018. |
whereas gp120 subunits with asp or asn at position 324 were fusogenic with coreceptor chimeras containing either the n-terminal domain or the body of ccr5, substitution of charged (glu, lys) or small hydrophobic (gly, ala) residues resulted in complete loss of fusogenic activity with the n terminus and markedly reduced utilization of the body of ccr5, although their ability to use wild-type ccr5 was unchanged. |
2005-08-15 |
2023-08-12 |
Not clear |