| Publication |
Sentence |
Publish Date |
Extraction Date |
Species |
| Yngve Johansen, Hege Christin Widerøe, Jostein Krane, Anders Johnsso. Proton magic angle spinning NMR reveals new features in photodynamically treated bacteria. Zeitschrift fur Naturforschung. C, Journal of biosciences. vol 58. issue 5-6. 2003-10-21. PMID:12872936. |
it is hypothesized that the irradiation, inducing porphyrin photosensitization amplified by ala incubation, leads to elimination of the osmolyte glycine betaine and possibly also proline by so-called regulatory volume decrease (rvd) mechanisms. |
2003-10-21 |
2023-08-12 |
Not clear |
| Josephine C Ferreon, Vincent J Hilse. The effect of the polyproline II (PPII) conformation on the denatured state entropy. Protein science : a publication of the Protein Society. vol 12. issue 3. 2003-10-07. PMID:12592015. |
the probability of the ppii conformation in the denatured states for ala and gly were found to be significant, approximately 30% and approximately 10%, respectively, resulting in a dramatic reduction in the conformational entropy of folding. |
2003-10-07 |
2023-08-12 |
Not clear |
| Tadayuki Uno, Rikiharu Sakamoto, Yoshikazu Tomisugi, Yoshinobu Ishikawa, Anthony J Wilkinso. Inversion of axial coordination in myoglobin to create a "proximal" ligand binding pocket. Biochemistry. vol 42. issue 34. 2003-10-07. PMID:12939147. |
the replacement of the proximal his93 ligand by noncoordinating ala (h64v/v68h/h93a) or gly (h64v/v68h/h93g) residues resulted unexpectedly in a six-coordinate low-spin species in both ferric and ferrous states. |
2003-10-07 |
2023-08-12 |
Not clear |
| Jun Ashida, Kosuke Ohgo, Kohei Komatsu, Ayumi Kubota, Tetsuo Asakur. Determination of the torsion angles of alanine and glycine residues of model compounds of spider silk (AGG)(10) using solid-state NMR methods. Journal of biomolecular NMR. vol 25. issue 2. 2003-09-26. PMID:12652118. |
in this paper, two dimensional spin diffusion solid-state nmr under off magic angle spinning (omas), (13)c chemical shift contour plots, and rotational echo double resonance (redor) were applied to determine the torsion angles of one ala and two kinds of gly residues in the ala-gly-gly sequence of (13)c=o isotope-labeled (ala-gly-gly)(10). |
2003-09-26 |
2023-08-12 |
spider |
| Hiroki Higashibata, Masood A Siddiqui, Masahiro Takagi, Tadayuki Imanaka, Shinsuke Fujiwar. Surface histidine residue of archaeal histone affects DNA compaction and thermostability. FEMS microbiology letters. vol 224. issue 1. 2003-09-22. PMID:12855162. |
the mutant histones, hpkb-h50a, hpkb-h50v, and hpkb-h50g were constructed by replacing conserved surface his50 with ala, val, and gly, respectively. |
2003-09-22 |
2023-08-12 |
Not clear |
| Kiyoshi Ito, Xiaohang Ma, Nik Azmi, Hua-Shan Huang, Mikio Fujii, Tadashi Yoshimot. Novel aminopeptidase specific for glycine from Actinomucor elegans. Bioscience, biotechnology, and biochemistry. vol 67. issue 1. 2003-09-08. PMID:12619677. |
the order was gly >> ala >> met > arg > ser > leu. |
2003-09-08 |
2023-08-12 |
Not clear |
| Masato Shiraki, Noriyuki Koyam. Involvement of glycine and aspartate residues in the binding capacity of FAD in the NADH dehydrogenase from an alkaliphilic Bacillus. Current microbiology. vol 46. issue 6. 2003-08-29. PMID:12732950. |
in this region, four amino acid residues-thr, ala, gly, and asp-are highly conserved. |
2003-08-29 |
2023-08-12 |
Not clear |
| Bin Li, Valerie Dagget. Molecular basis for the extensibility of elastin. Journal of muscle research and cell motility. vol 23. issue 5-6. 2003-08-14. PMID:12785105. |
its soluble precursor (tropoelastin) has two major types of alternating domains: (1) hydrophilic cross-linked domains rich in lys and ala and (2) hydrophobic domains (responsible for elasticity) rich in val, pro, and gly, which often occur in repeats of vpgvg or vggvg. |
2003-08-14 |
2023-08-12 |
Not clear |
| Toshiyuki Mori, Laura G Barrientos, Zhaozhong Han, Angela M Gronenborn, Jim A Turpin, Michael R Boy. Functional homologs of cyanovirin-N amenable to mass production in prokaryotic and eukaryotic hosts. Protein expression and purification. vol 26. issue 1. 2003-08-13. PMID:12356469. |
we observed that n-glycosylation of cv-n in yeast eliminated the anti-hiv activity, and that dimeric forms and aggregates of cv-n occurred under certain conditions, potentially complicating the efficient, large-scale manufacture of pure monomeric cv-n. we therefore expressed and tested cv-n homologs in which the glycosylation-susceptible asn residue at position 30 was replaced with ala, gln, or val, and/or the pro at position 51 was replaced by gly to eliminate potential conformational heterogeneity. |
2003-08-13 |
2023-08-12 |
human |
| Yasumoto Nakazawa, Tetsuo Asakur. Structure determination of a peptide model of the repeated helical domain in Samia cynthia ricini silk fibroin before spinning by a combination of advanced solid-state NMR methods. Journal of the American Chemical Society. vol 125. issue 24. 2003-07-28. PMID:12797796. |
however, the torsion angles of the gly(25) residue adjacent to the c-terminal side of the poly-ala chain were determined to be (phi, psi) = (-66 degrees, -22 degrees ) and those of gly(12) and ala(13) residues at the n-terminal of the poly-ala chain to be (phi, psi) = (-70 degrees, -30 degrees ). |
2003-07-28 |
2023-08-12 |
Not clear |
| Tsunenori Kameda, Chenhua Zhao, Jun Ashida, Tetsuo Asakur. Determination of distance of intra-molecular hydrogen bonding in (Ala-Gly)15 with silk I form after removal of the effect of MAS frequency in REDOR experiment. Journal of magnetic resonance (San Diego, Calif. : 1997). vol 160. issue 2. 2003-07-24. PMID:12615148. |
in this study, 15n-dephased, 13c-observe redor has been carried out to determine the atomic distance of intra-molecular hydrogen bond between the 13c=o carbon of the 14th gly residue and the 15n nitrogen of the 17th ala residue of (ag)(6)a[1-13c]gag[15n]ag(ag)(6) with silk i form after removal of the effect of mas frequency on the re-coupling. |
2003-07-24 |
2023-08-12 |
Not clear |
| Raquel Negrão Carvalho, Therese Solstad, Elisa Bjørgo, João Filipe Barroso, Torgeir Flatmar. Deamidations in recombinant human phenylalanine hydroxylase. Identification of labile asparagine residues and functional characterization of Asn --> Asp mutant forms. The Journal of biological chemistry. vol 278. issue 17. 2003-07-16. PMID:12554741. |
by contrast, the substitution of gly(33) with ala or val, both preventing the deamidation of asn(32), resulted in enzyme forms that were phosphorylated at a similar rate as nondeamidated wt-hpah, even on 24-h expression. |
2003-07-16 |
2023-08-12 |
human |
| Shizue Katoh, Cui Hong, Yuki Tsunoda, Katsuyoshi Murata, Ryota Takai, Eiichi Minami, Toshimasa Yamazaki, Etsuko Kato. High precision NMR structure and function of the RING-H2 finger domain of EL5, a rice protein whose expression is increased upon exposure to pathogen-derived oligosaccharides. The Journal of biological chemistry. vol 278. issue 17. 2003-07-16. PMID:12588869. |
the el5 ring-h2 finger domain consists of two-stranded beta-sheets (beta1, ala(147)-phe(149); beta2, gly(156)-his(158)), one alpha-helix (cys(161)-leu(166)), and two large n- and c-terminal loops. |
2003-07-16 |
2023-08-12 |
Not clear |
| Jikui Song, Michael Laskowski, M A Qasim, John L Markle. Two conformational states of Turkey ovomucoid third domain at low pH: three-dimensional structures, internal dynamics, and interconversion kinetics and thermodynamics. Biochemistry. vol 42. issue 21. 2003-07-16. PMID:12767219. |
stabilization of the trans state in p(5)-pro(14)xxx omtky3 mutants follows the series xxx = gly > asp > glu > ala approximately equal his > pro. |
2003-07-16 |
2023-08-12 |
Not clear |
| A Asano, K Minoura, T Yamada, A Numata, T Ishida, Y Katsuya, Y Mezaki, M Sasaki, T Taniguchi, M Nakai, H Hasegawa, A Terashima, M Do. Effect of asymmetric modification on the conformation of ascidiacyclamide analogs. The journal of peptide research : official journal of the American Peptide Society. vol 60. issue 1. 2003-07-11. PMID:12081623. |
the ile1 residue was replaced by gly, ala, aminoisobutyric acid (aib), val, leu, phe or d-ile, and the d-val3 residue was replaced by val. |
2003-07-11 |
2023-08-12 |
Not clear |
| Nirmalendu Saha, Supiya Dutta, Arundhati Bhattacharje. Role of amino acid metabolism in an air-breathing catfish, Clarias batrachus in response to exposure to a high concentration of exogenous ammonia. Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology. vol 133. issue 2. 2003-07-11. PMID:12381386. |
there was approximately two- to threefold increase of non-essential faas in different tissues and in the plasma of the nh(4)cl-exposed fish compared to the control fish after 7 days of exposure, which was mainly attributable to the increase of asp, ala, gly, glu, gln and taurine (tau) concentrations in general, with certain tissue-specific variations. |
2003-07-11 |
2023-08-12 |
Not clear |
| Neel S Bhavesh, Ragini Sinha, P M Krishna Mohan, Ramakrishna V Hosu. NMR elucidation of early folding hierarchy in HIV-1 protease. The Journal of biological chemistry. vol 278. issue 22. 2003-07-10. PMID:12644464. |
interestingly, the proline residues influence the structural propensities, and the small amino acids, gly and ala, enhance the flexibility of the protein. |
2003-07-10 |
2023-08-12 |
Not clear |
| G A Agaeva, N M Godzhae. [Conformational properties of the CalliFMRF-amide series neuropeptides]. Bioorganicheskaia khimiia. vol 29. issue 2. 2003-07-10. PMID:12708313. |
three members of these group (1) (xaa = thr, yaa = gln), (2) (xaa = thr, yaa = ser), and (3) (xaa = yaa = ser) can stimulate the saliva secretion from the separated salivary gland of the calliphora vomitoria fly, whereas two other callifmrf-amides (4) (xaa = lys, yaa = asn) and (5) (xaa = ala, yaa = gly) are inactive in this biological test. |
2003-07-10 |
2023-08-12 |
Not clear |
| Eszter Czinki, Attila G Császár, András Percze. A theoretical case study of type I and type II beta-turns. Chemistry (Weinheim an der Bergstrasse, Germany). vol 9. issue 5. 2003-07-08. PMID:12596154. |
the models contain all possible combinations of the amino acid residues gly, ala, val, and ser, with all possible side-chain orientations where applicable in a dipeptide. |
2003-07-08 |
2023-08-12 |
Not clear |
| Brooke D Lazarus, Julie Milland, Paul A Ramsland, Effie Mouhtouris, Mauro S Sandri. Histidine 271 has a functional role in pig alpha-1,3galactosyltransferase enzyme activity. Glycobiology. vol 12. issue 12. 2003-07-07. PMID:12499401. |
using pig gt as the representative member of the gt family, we show that replacement of his271 with ala, leu, or gly caused complete loss of function, in contrast to replacement with arg, another basic charged residue, which did not alter the ability of gt to produce galalpha(1,3)gal. |
2003-07-07 |
2023-08-12 |
human |